{
    "type": "genome",
    "identifier": "GCF_001642875.1",
    "organism": "Mariniblastus fucicola",
    "title": "Mariniblastus fucicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Faculty of Sciences, University of Porto",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001642875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03253105",
        "wgs_master": "LWSI00000000.1",
        "refseq_category": "na",
        "taxid": "980251",
        "species_taxid": "980251",
        "organism_name": "Mariniblastus fucicola",
        "infraspecific_name": "strain=FC18",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/12",
        "asm_name": "ASM164287v1",
        "asm_submitter": "Faculty of Sciences, University of Porto",
        "gbrs_paired_asm": "GCA_001642875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/875/GCF_001642875.1_ASM164287v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6529821",
        "genome_size_ungapped": "6529821",
        "gc_percent": "53.500000",
        "replicon_count": "0",
        "scaffold_count": "57",
        "contig_count": "57",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001642875.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "4983",
        "protein_coding_gene_count": "4866",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-12",
    "dateModified": "2016-05-12",
    "datePublished": "2016-05-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mariniblastus fucicola"
        ],
        "sample_taxid": [
            "980251"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Portugal: Porto, Foz"
        ],
        "sample_host_location_id": [],
        "data_size": "1.844 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6529821",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "706834",
        "N50 (bp)": "268453",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.4",
        "Number of CDSs": "4906",
        "Average Protein Length": "384.5",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mariniblastus fucicola",
                "strain": "strain=FC18",
                "accession": "GCA_001642875.1",
                "taxid": 980251,
                "species_taxid": 980251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2151,
                "total_fragments": 2154,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mariniblastus fucicola",
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                "accession": "GCA_008087665.1",
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                "species_taxid": 980251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9927,
                "matched_fragments": 2152,
                "total_fragments": 2154,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodopirellula baltica",
                "strain": "strain=1",
                "accession": "GCA_000196115.1",
                "taxid": 265606,
                "species_taxid": 265606,
                "relation_to_type": "type",
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                "ani": 76.0854,
                "matched_fragments": 50,
                "total_fragments": 2154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rosistilla oblonga",
                "strain": "strain=CA51",
                "accession": "GCA_007751715.1",
                "taxid": 2527990,
                "species_taxid": 2527990,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7533,
                "matched_fragments": 55,
                "total_fragments": 2154,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rosistilla ulvae",
                "strain": "strain=EC9",
                "accession": "GCA_007741475.1",
                "taxid": 1930277,
                "species_taxid": 1930277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7393,
                "matched_fragments": 53,
                "total_fragments": 2154,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.38,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008087665.1",
                "gtdb_species": "s__Mariniblastus fucicola",
                "ani": 99.9927,
                "matched_fragments": 2152,
                "total_fragments": 2154,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Mariniblastus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014192335.1",
                "gtdb_species": "s__Rhodopirellula rubra",
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                "matched_fragments": 57,
                "total_fragments": 2154,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rhodopirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.37",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_007859835.1",
                "gtdb_species": "s__Novipirellula sp007859835",
                "ani": 76.5207,
                "matched_fragments": 54,
                "total_fragments": 2154,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Novipirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000196115.1",
                "gtdb_species": "s__Rhodopirellula baltica",
                "ani": 76.1345,
                "matched_fragments": 50,
                "total_fragments": 2154,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rhodopirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_007751715.1",
                "gtdb_species": "s__Rosistilla oblonga",
                "ani": 75.7444,
                "matched_fragments": 55,
                "total_fragments": 2154,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rosistilla",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 25.0,
        "optimum_ph": null,
        "genome_size": 6526971.5,
        "gc_content": 53.412,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mariniblastus",
        "fucicola"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}