{ "type": "genome", "identifier": "GCF_001642955.1", "organism": "Rubripirellula obstinata", "title": "Rubripirellula obstinata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Sciences, University of Porto", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001642955.1", "bioproject": "PRJNA224116", "biosample": "SAMN03252601", "wgs_master": "LWSK00000000.1", "refseq_category": "na", "taxid": "406547", "species_taxid": "406547", "organism_name": "Rubripirellula obstinata", "infraspecific_name": "strain=CECT 8602", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/12", "asm_name": "ASM164295v1", "asm_submitter": "Faculty of Sciences, University of Porto", "gbrs_paired_asm": "GCA_001642955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/955/GCF_001642955.1_ASM164295v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6578705", "genome_size_ungapped": "6578705", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "307", "contig_count": "307", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001642955.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5051", "protein_coding_gene_count": "4962", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-12", "dateModified": "2016-05-12", "datePublished": "2016-05-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubripirellula obstinata" ], "sample_taxid": [ "406547" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Porto, Foz" ], "sample_host_location_id": [], "data_size": "1.856 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6578705", "Number of Sequences": "307", "Longest Sequences (bp)": "249744", "N50 (bp)": "45365", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "4816", "Average Protein Length": "371.0", "Coding Ratio (%)": "81.5", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubripirellula obstinata", "strain": "strain=CECT 8602", "accession": "GCA_001642955.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2030, "total_fragments": 2042, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rubripirellula obstinata", "strain": "strain=LF1", "accession": "GCA_008374075.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 99.9315, "matched_fragments": 2040, "total_fragments": 2042, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodopirellula rubra", "strain": "strain=CECT 8075", "accession": "GCA_014192335.1", "taxid": 980271, "species_taxid": 980271, "relation_to_type": "type", "validated": true, "ani": 78.2306, "matched_fragments": 215, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula amarantea", "strain": "strain=Pla22", "accession": "GCA_007859865.1", "taxid": 2527999, "species_taxid": 2527999, "relation_to_type": "type", "validated": true, "ani": 78.1199, "matched_fragments": 253, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula tenax", "strain": "strain=Poly51", "accession": "GCA_007860125.1", "taxid": 2528015, "species_taxid": 2528015, "relation_to_type": "type", "validated": true, "ani": 77.6476, "matched_fragments": 304, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula reticaptiva", "strain": "strain=Poly59", "accession": "GCA_007860175.1", "taxid": 2528013, "species_taxid": 2528013, "relation_to_type": "type", "validated": true, "ani": 77.5071, "matched_fragments": 250, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula bahusiensis", "strain": "strain=SWK21", "accession": "GCA_002727185.1", "taxid": 2014065, "species_taxid": 2014065, "relation_to_type": "type", "validated": true, "ani": 77.3754, "matched_fragments": 177, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula lacrimiformis", "strain": "strain=K22.7", "accession": "GCA_007741535.1", "taxid": 1930273, "species_taxid": 1930273, "relation_to_type": "type", "validated": true, "ani": 77.1842, "matched_fragments": 307, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula baltica", "strain": "strain=1", "accession": "GCA_000196115.1", "taxid": 265606, "species_taxid": 265606, "relation_to_type": "type", "validated": true, "ani": 77.0872, "matched_fragments": 150, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula europaea", "strain": "strain=6C", "accession": "GCA_000338295.1", "taxid": 1263866, "species_taxid": 1263866, "relation_to_type": "type", "validated": true, "ani": 77.0345, "matched_fragments": 169, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novipirellula artificiosorum", "strain": "strain=Poly41", "accession": "GCA_007860135.1", "taxid": 2528016, "species_taxid": 2528016, "relation_to_type": "type", "validated": true, "ani": 76.9003, "matched_fragments": 155, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula islandica", "strain": "strain=K833", "accession": "GCA_001027925.1", "taxid": 595434, "species_taxid": 595434, "relation_to_type": "type", "validated": true, "ani": 76.7823, "matched_fragments": 194, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria varia", "strain": "strain=Pla52n", "accession": "GCA_007860045.1", "taxid": 2528005, "species_taxid": 2528005, "relation_to_type": "type", "validated": true, "ani": 76.4755, "matched_fragments": 171, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima sediminicola", "strain": "strain=JC651", "accession": "GCA_009618275.1", "taxid": 2662066, 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