{ "type": "genome", "identifier": "GCF_001642995.1", "organism": "Streptomyces jeddahensis", "title": "Streptomyces jeddahensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001642995.1", "bioproject": "PRJNA224116", "biosample": "SAMN04325095", "wgs_master": "LOHS00000000.1", "refseq_category": "reference genome", "taxid": "1716141", "species_taxid": "1716141", "organism_name": "Streptomyces jeddahensis", "infraspecific_name": "strain=G25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/12", "asm_name": "ASM164299v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_001642995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/995/GCF_001642995.1_ASM164299v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8449625", "genome_size_ungapped": "8449625", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "207", "contig_count": "207", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001642995.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7531", "protein_coding_gene_count": "7152", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-12", "dateModified": "2016-05-12", "datePublished": "2016-05-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces jeddahensis" ], "sample_taxid": [ "1716141" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Jeddah" ], "sample_host_location_id": [], "data_size": "2.299 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8449625", "Number of Sequences": "207", "Longest Sequences (bp)": "213041", "N50 (bp)": "86423", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "7497", "Average Protein Length": "322.6", "Coding Ratio (%)": "85.9", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces jeddahensis", "strain": "strain=G25", "accession": "GCA_001642995.1", "taxid": 1716141, "species_taxid": 1716141, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2708, 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"GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 82.8295, "matched_fragments": 1471, "total_fragments": 2715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavofungini", "strain": "strain=JCM 4753", "accession": "GCA_016411765.1", "taxid": 68200, "species_taxid": 68200, "relation_to_type": "type", "validated": true, "ani": 82.7118, "matched_fragments": 1455, "total_fragments": 2715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavofungini", "strain": "strain=JCM 4753", "accession": "GCA_014650815.1", "taxid": 68200, "species_taxid": 68200, "relation_to_type": "type", "validated": true, "ani": 82.5947, "matched_fragments": 1444, "total_fragments": 2715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 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