{
    "type": "genome",
    "identifier": "GCF_001643305.1",
    "organism": "Aeromonas salmonicida subsp. salmonicida",
    "title": "Aeromonas salmonicida subsp. salmonicida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad Mayor",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001643305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04449999",
        "wgs_master": "LSGW00000000.1",
        "refseq_category": "na",
        "taxid": "29491",
        "species_taxid": "645",
        "organism_name": "Aeromonas salmonicida subsp. salmonicida",
        "infraspecific_name": "strain=ATCC 33658",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/13",
        "asm_name": "ASM164330v1",
        "asm_submitter": "Universidad Mayor",
        "gbrs_paired_asm": "GCA_001643305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/643/305/GCF_001643305.1_ASM164330v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4728143",
        "genome_size_ungapped": "4728143",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "119",
        "contig_count": "119",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001643305.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4534",
        "protein_coding_gene_count": "4239",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-13",
    "dateModified": "2016-05-13",
    "datePublished": "2016-05-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aeromonas salmonicida subsp. salmonicida"
        ],
        "sample_taxid": [
            "29491"
        ],
        "sample_host_organism": [
            "Salmo salar"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.340 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4728143",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "339604",
        "N50 (bp)": "89474",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "4541",
        "Average Protein Length": "298.3",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
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                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1512,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida",
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                "accession": "GCA_900445115.1",
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                "species_taxid": 645,
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                "validated": true,
                "ani": 99.9931,
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                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
                "strain": "strain=CIP 103209",
                "accession": "GCA_000820065.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Aeromonas salmonicida subsp. masoucida",
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                "accession": "GCA_000647955.1",
                "taxid": 197700,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1318,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. pectinolytica",
                "strain": "strain=34mel",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0647,
                "matched_fragments": 1284,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella jiangmenensis",
                "strain": "strain=JM162201",
                "accession": "GCA_018596335.1",
                "taxid": 2837387,
                "species_taxid": 2837387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7471,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1338,
                "matched_fragments": 122,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
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                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1049,
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                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
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                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0997,
                "matched_fragments": 131,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
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                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0491,
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                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001643305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
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                "num_clustered_genomes": 74,
                "status": "conclusive"
            },
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                "accession": "GCF_000820005.1",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
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                "accession": "GCF_000820025.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "salmonicida"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}