{ "type": "genome", "identifier": "GCF_001644565.1", "organism": "Deinococcus puniceus", "title": "Deinococcus puniceus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001644565.1", "bioproject": "PRJNA224116", "biosample": "SAMN03285365", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1182568", "species_taxid": "1182568", "organism_name": "Deinococcus puniceus", "infraspecific_name": "strain=DY1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/16", "asm_name": "ASM164456v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_001644565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/644/565/GCF_001644565.1_ASM164456v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2971983", "genome_size_ungapped": "2971983", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001644565.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2795", "protein_coding_gene_count": "2728", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-16", "dateModified": "2016-05-16", "datePublished": "2016-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus puniceus" ], "sample_taxid": [ "1182568" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: mountain of Deogyusan" ], "sample_host_location_id": [], "data_size": "0.828 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2971983", "Number of Sequences": "1", "Longest Sequences (bp)": "2971983", "N50 (bp)": "2971983", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.6", "Number of CDSs": "2745", "Average Protein Length": "310.2", "Coding Ratio (%)": "86.0", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus puniceus", "strain": "strain=DY1", "accession": "GCA_001644565.1", "taxid": 1182568, "species_taxid": 1182568, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 990, "total_fragments": 990, "ani_threshold": 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metallilatus", "strain": "strain=MA1002", "accession": "GCA_004758605.1", "taxid": 1211322, "species_taxid": 1211322, "relation_to_type": "type", "validated": true, "ani": 78.2532, "matched_fragments": 424, "total_fragments": 990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus multiflagellatus", "strain": "strain=KACC 19287", "accession": "GCA_020166415.1", "taxid": 1656887, "species_taxid": 1656887, "relation_to_type": "type", "validated": true, "ani": 78.1438, "matched_fragments": 438, "total_fragments": 990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus metallilatus", "strain": "strain=MA1002", "accession": "GCA_004115945.1", "taxid": 1211322, "species_taxid": 1211322, "relation_to_type": "type", "validated": true, "ani": 78.0709, "matched_fragments": 410, "total_fragments": 990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus arcticus", "strain": "strain=OD32", 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