{ "type": "genome", "identifier": "GCF_001644575.1", "organism": "Mycobacterium adipatum", "title": "Mycobacterium adipatum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Scineces", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001644575.1", "bioproject": "PRJNA224116", "biosample": "SAMN04959083", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1682113", "species_taxid": "1682113", "organism_name": "Mycobacterium adipatum", "infraspecific_name": "strain=YC-RL4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/16", "asm_name": "ASM164457v1", "asm_submitter": "Chinese Academy of Agricultural Scineces", "gbrs_paired_asm": "GCA_001644575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/644/575/GCF_001644575.1_ASM164457v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6053985", "genome_size_ungapped": "6053985", "gc_percent": "67.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "5883", "protein_coding_gene_count": "5744", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-16", "dateModified": "2016-05-16", "datePublished": "2016-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium adipatum" ], "sample_taxid": [ "1682113" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong" ], "sample_host_location_id": [], "data_size": "1.651 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6053985", "Number of Sequences": "2", "Longest Sequences (bp)": "5801417", "N50 (bp)": "5801417", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "5911", "Average Protein Length": "317.8", "Coding Ratio (%)": "93.1", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium bacteremicum", "strain": "strain=DSM 45578", "accession": "GCA_002086115.1", "taxid": 564198, "species_taxid": 564198, "relation_to_type": "type", "validated": true, "ani": 83.2341, "matched_fragments": 1328, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=DSM 44074", "accession": "GCA_000724065.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 82.3667, "matched_fragments": 1250, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=ATCC 25795", "accession": "GCA_000691525.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 82.3616, "matched_fragments": 1222, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=DSM 44074", "accession": "GCA_005670605.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 82.3436, "matched_fragments": 1226, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=CCUG 47953", "accession": "GCA_002101555.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 81.8954, "matched_fragments": 1129, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 81.8574, "matched_fragments": 1146, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_000613185.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 81.8357, "matched_fragments": 1179, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 81.8015, "matched_fragments": 1166, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 81.7653, "matched_fragments": 1153, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.5969, "matched_fragments": 970, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 80.5484, "matched_fragments": 780, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.5427, "matched_fragments": 981, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 80.54, "matched_fragments": 782, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.5136, "matched_fragments": 974, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=ATCC 700731", "accession": "GCA_012396425.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 80.2809, "matched_fragments": 1005, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=type strain: DSM 44393", "accession": "GCA_000455325.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 80.2664, "matched_fragments": 1009, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0411, "matched_fragments": 998, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0262, "matched_fragments": 1003, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 79.9856, "matched_fragments": 943, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 79.9482, "matched_fragments": 964, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9285, "matched_fragments": 955, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 79.9226, "matched_fragments": 965, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 79.6722, "matched_fragments": 922, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 79.6392, "matched_fragments": 920, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.5574, "matched_fragments": 823, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.5016, "matched_fragments": 836, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 79.3415, "matched_fragments": 799, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.305, "matched_fragments": 859, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium arosiense", "strain": "strain=DSM 45069", "accession": "GCA_002086125.1", "taxid": 425468, "species_taxid": 425468, "relation_to_type": "type", "validated": true, "ani": 78.6756, "matched_fragments": 651, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacteroides chelonae", "strain": "strain=CCUG 47445", "accession": "GCA_001632805.1", "taxid": 1774, "species_taxid": 1774, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2053, "matched_fragments": 433, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=DSM 43373", "accession": "GCA_900114685.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6478, "matched_fragments": 499, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001644575.1", "gtdb_species": "s__Mycobacterium sp001644575", "ani": 100.0, "matched_fragments": 2013, "total_fragments": 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