{ "type": "genome", "identifier": "GCF_001644645.1", "organism": "Flavisolibacter tropicus", "title": "Flavisolibacter tropicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001644645.1", "bioproject": "PRJNA224116", "biosample": "SAMN03287577", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1492898", "species_taxid": "1492898", "organism_name": "Flavisolibacter tropicus", "infraspecific_name": "strain=LCS9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/16", "asm_name": "ASM164464v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_001644645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/644/645/GCF_001644645.1_ASM164464v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5940863", "genome_size_ungapped": "5940863", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "4973", "protein_coding_gene_count": "4906", "non_coding_gene_count": "56", "pubmed_id": "27259556" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-16", "dateModified": "2016-05-16", "datePublished": "2016-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavisolibacter tropicus" ], "sample_taxid": [ "1492898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5940863", "Number of Sequences": "1", "Longest Sequences (bp)": "5940863", "N50 (bp)": "5940863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "4895", "Average Protein Length": "337.3", "Coding Ratio (%)": "83.4", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavisolibacter tropicus", "strain": "strain=LCS9", "accession": "GCA_001644645.1", "taxid": 1492898, "species_taxid": 1492898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1978, "total_fragments": 1980, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga pinensis", "strain": "strain=DSM 2588", "accession": "GCA_000024005.1", "taxid": 79329, "species_taxid": 79329, "relation_to_type": "type", "validated": true, "ani": 77.0638, "matched_fragments": 59, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter ginsengisoli", "strain": "strain=DSM 18119", "accession": "GCA_900129295.1", "taxid": 462367, "species_taxid": 462367, "relation_to_type": "type", "validated": true, "ani": 76.9535, "matched_fragments": 138, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter ginsenosidimutans", "strain": "strain=Gsoil 636", "accession": "GCA_007970805.1", "taxid": 661481, "species_taxid": 661481, "relation_to_type": "type", "validated": true, "ani": 76.8103, "matched_fragments": 86, "total_fragments": 1980, "ani_threshold": 95, 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"GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 76.2293, "matched_fragments": 73, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.1906, "matched_fragments": 91, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 76.1745, "matched_fragments": 63, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, 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"matched_fragments": 55, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisegetis", "strain": "strain=DSM 18108", "accession": "GCA_900168065.1", "taxid": 393003, "species_taxid": 393003, "relation_to_type": "type", "validated": true, "ani": 75.424, "matched_fragments": 53, "total_fragments": 1980, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001644645.1", "gtdb_species": "s__Flavisolibacter_B tropicus", "ani": 100.0, "matched_fragments": 1977, "total_fragments": 1980, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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