{
    "type": "genome",
    "identifier": "GCF_001644705.1",
    "organism": "Dickeya solani IPO 2222",
    "title": "Dickeya solani IPO 2222",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute for integrative biology of the cell",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001644705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04604869",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1225786",
        "species_taxid": "1089444",
        "organism_name": "Dickeya solani IPO 2222",
        "infraspecific_name": "strain=IPO 2222",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/16",
        "asm_name": "ASM164470v1",
        "asm_submitter": "Institute for integrative biology of the cell",
        "gbrs_paired_asm": "GCA_001644705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/644/705/GCF_001644705.1_ASM164470v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4919833",
        "genome_size_ungapped": "4919833",
        "gc_percent": "56.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-04",
        "total_gene_count": "4279",
        "protein_coding_gene_count": "4118",
        "non_coding_gene_count": "105",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-16",
    "dateModified": "2016-05-16",
    "datePublished": "2016-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dickeya solani IPO 2222"
        ],
        "sample_taxid": [
            "1225786"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "1.385 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4919833",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4919833",
        "N50 (bp)": "4919833",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.2",
        "Number of CDSs": "4212",
        "Average Protein Length": "333.9",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "22",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dickeya solani",
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                "accession": "GCA_001644705.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1637,
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 1619,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dickeya dadantii subsp. dieffenbachiae",
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                "ani_threshold": 95,
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya dadantii",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya fangzhongdai",
                "strain": "strain=CGMCC 1.15464",
                "accession": "GCA_014642955.1",
                "taxid": 1778540,
                "species_taxid": 1778540,
                "relation_to_type": "type",
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            {
                "organism_name": "Dickeya fangzhongdai",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Dickeya dianthicola",
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                "matched_fragments": 1339,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Musicola keenii",
                "strain": "strain=A3967",
                "accession": "GCA_022761095.1",
                "taxid": 2884250,
                "species_taxid": 2884250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2208,
                "matched_fragments": 858,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
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                "ani": 79.6197,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
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                "ani": 79.4057,
                "matched_fragments": 585,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
                "accession": "GCA_001971035.1",
                "taxid": 28141,
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            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001644705.1",
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                "matched_fragments": 1638,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Dickeya",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Dickeya",
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                "num_clustered_genomes": 14,
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "IPO",
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}