{
    "type": "genome",
    "identifier": "GCF_001646675.1",
    "organism": "Rhodococcoides corynebacterioides",
    "title": "Rhodococcoides corynebacterioides",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northumbria University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001646675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04357305",
        "wgs_master": "LPZL00000000.1",
        "refseq_category": "na",
        "taxid": "53972",
        "species_taxid": "53972",
        "organism_name": "Rhodococcoides corynebacterioides",
        "infraspecific_name": "strain=DSM 20151",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/18",
        "asm_name": "ASM164667v1",
        "asm_submitter": "Northumbria University",
        "gbrs_paired_asm": "GCA_001646675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/646/675/GCF_001646675.1_ASM164667v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3900442",
        "genome_size_ungapped": "3900442",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "180",
        "contig_count": "180",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001646675.1-RS_2024_08_25",
        "annotation_date": "2024-08-25",
        "total_gene_count": "3727",
        "protein_coding_gene_count": "3572",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-18",
    "dateModified": "2016-05-18",
    "datePublished": "2016-05-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodococcoides corynebacterioides"
        ],
        "sample_taxid": [
            "53972"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.053 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3900442",
        "Number of Sequences": "180",
        "Longest Sequences (bp)": "273262",
        "N50 (bp)": "42599",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.2",
        "Number of CDSs": "3472",
        "Average Protein Length": "326.0",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhodococcus corynebacterioides",
                "strain": "strain=DSM 20151",
                "accession": "GCA_001646675.1",
                "taxid": 53972,
                "species_taxid": 53972,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1213,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodococcus corynebacterioides",
                "strain": "strain=NBRC 14404",
                "accession": "GCA_001894765.1",
                "taxid": 53972,
                "species_taxid": 53972,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9869,
                "matched_fragments": 1211,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodococcus kroppenstedtii",
                "strain": "strain=DSM 44908",
                "accession": "GCA_900111805.1",
                "taxid": 293050,
                "species_taxid": 293050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0223,
                "matched_fragments": 1094,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus kroppenstedtii",
                "strain": "strain=DSM 44908",
                "accession": "GCA_001646725.1",
                "taxid": 293050,
                "species_taxid": 293050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9335,
                "matched_fragments": 1043,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus tukisamuensis",
                "strain": "strain=JCM 11308",
                "accession": "GCA_900101735.1",
                "taxid": 168276,
                "species_taxid": 168276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2259,
                "matched_fragments": 544,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus maanshanensis",
                "strain": "strain=DSM 44675",
                "accession": "GCA_900109405.1",
                "taxid": 183556,
                "species_taxid": 183556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2025,
                "matched_fragments": 514,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus spelaei",
                "strain": "strain=C9-5",
                "accession": "GCA_006704125.1",
                "taxid": 2546320,
                "species_taxid": 2546320,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1828,
                "matched_fragments": 507,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella defluvii",
                "strain": "strain=Ca11",
                "accession": "GCA_000738775.1",
                "taxid": 1323361,
                "species_taxid": 1323361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9063,
                "matched_fragments": 488,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=DSM 43257",
                "accession": "GCA_900156775.1",
                "taxid": 37329,
                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6182,
                "matched_fragments": 506,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
                "strain": "strain=NBRC 108937",
                "accession": "GCA_001612615.1",
                "taxid": 756689,
                "species_taxid": 756689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3685,
                "matched_fragments": 486,
                "total_fragments": 1218,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001894765.1",
                "gtdb_species": "s__Rhodococcus_C corynebacterioides",
                "ani": 99.9869,
                "matched_fragments": 1211,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900111805.1",
                "gtdb_species": "s__Rhodococcus_C kroppenstedtii",
                "ani": 92.0122,
                "matched_fragments": 1095,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000686025.1",
                "gtdb_species": "s__Rhodococcus_C sp000686025",
                "ani": 81.3948,
                "matched_fragments": 857,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001426185.1",
                "gtdb_species": "s__Rhodococcus_C sp001426185",
                "ani": 81.0993,
                "matched_fragments": 759,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001894985.1",
                "gtdb_species": "s__Rhodococcus tukisamuensis",
                "ani": 79.2996,
                "matched_fragments": 526,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006704125.1",
                "gtdb_species": "s__Rhodococcus sp006704125",
                "ani": 79.1935,
                "matched_fragments": 505,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005484805.1",
                "gtdb_species": "s__Rhodococcus sp005484805",
                "ani": 79.0154,
                "matched_fragments": 524,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001646785.1",
                "gtdb_species": "s__Rhodococcus phenolicus",
                "ani": 78.9159,
                "matched_fragments": 464,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000738775.1",
                "gtdb_species": "s__Rhodococcus defluvii",
                "ani": 78.9064,
                "matched_fragments": 488,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012726205.1",
                "gtdb_species": "s__Rhodococcus sp012726205",
                "ani": 78.7696,
                "matched_fragments": 470,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001182745.1",
                "gtdb_species": "s__Nocardia farcinica",
                "ani": 78.6656,
                "matched_fragments": 507,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCF_006716565.1",
                "gtdb_species": "s__Nocardia bhagyanarayanae",
                "ani": 78.5261,
                "matched_fragments": 480,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001612615.1",
                "gtdb_species": "s__Nocardia amikacinitolerans",
                "ani": 78.3492,
                "matched_fragments": 489,
                "total_fragments": 1218,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Rhodococcoides",
        "corynebacterioides"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}