{
    "type": "genome",
    "identifier": "GCF_001646785.1",
    "organism": "Rhodococcus phenolicus",
    "title": "Rhodococcus phenolicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northumbria University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001646785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04357313",
        "wgs_master": "LRRH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "263849",
        "species_taxid": "263849",
        "organism_name": "Rhodococcus phenolicus",
        "infraspecific_name": "strain=DSM 44812",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/18",
        "asm_name": "ASM164678v1",
        "asm_submitter": "Northumbria University",
        "gbrs_paired_asm": "GCA_001646785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/646/785/GCF_001646785.1_ASM164678v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6283907",
        "genome_size_ungapped": "6283559",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "232",
        "contig_count": "232",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001646785.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "6048",
        "protein_coding_gene_count": "5793",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-18",
    "dateModified": "2016-05-18",
    "datePublished": "2016-05-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodococcus phenolicus"
        ],
        "sample_taxid": [
            "263849"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.715 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6283907",
        "Number of Sequences": "232",
        "Longest Sequences (bp)": "255008",
        "N50 (bp)": "72008",
        "Gap Ratio (%)": "0.005570",
        "GCcontent (%)": "68.4",
        "Number of CDSs": "5846",
        "Average Protein Length": "313.4",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodococcus phenolicus",
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                "status": "conclusive"
            },
            {
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                "status": "below_threshold"
            },
            {
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                "organism_name": "Rhodococcus aetherivorans",
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                "species_taxid": 191292,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus aetherivorans",
                "strain": "strain=JCM 14343",
                "accession": "GCA_009176285.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus rhodochrous",
                "strain": "strain=DSM 43241",
                "accession": "GCA_001646825.1",
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                "species_taxid": 1829,
                "relation_to_type": "suspected-type",
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                "matched_fragments": 986,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "accession": "GCA_001646655.1",
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                "species_taxid": 223392,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            },
            {
                "organism_name": "Rhodococcus yananensis",
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                "mean_intra_species_ani": "N/A",
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}