{ "type": "genome", "identifier": "GCF_001648155.1", "organism": "Chryseobacterium glaciei", "title": "Chryseobacterium glaciei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Himalayan Bioresource Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001648155.1", "bioproject": "PRJNA224116", "biosample": "SAMN04524003", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1685010", "species_taxid": "1685010", "organism_name": "Chryseobacterium glaciei", "infraspecific_name": "strain=IHBB 10212", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/19", "asm_name": "ASM164815v1", "asm_submitter": "CSIR-Institute of Himalayan Bioresource Technology", "gbrs_paired_asm": "GCA_001648155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/648/155/GCF_001648155.1_ASM164815v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4871648", "genome_size_ungapped": "4871648", "gc_percent": "34.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "4418", "protein_coding_gene_count": "4292", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-19", "dateModified": "2016-05-19", "datePublished": "2016-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium glaciei" ], "sample_taxid": [ "1685010" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Glacier at Lahual Spiti, Himachal Pradesh" ], "sample_host_location_id": [], "data_size": "1.352 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 8.0, "max": 8.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4871648", "Number of Sequences": "3", "Longest Sequences (bp)": "4843645", "N50 (bp)": "4843645", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "4317", "Average Protein Length": "325.7", "Coding Ratio (%)": "86.6", "Number of rRNAs": "21", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", 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"validated": true, "ani": 81.7046, "matched_fragments": 765, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 81.3853, "matched_fragments": 867, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 81.2368, "matched_fragments": 899, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vrystaatense", "strain": "strain=LMG 22846", "accession": "GCA_000737765.1", "taxid": 307480, "species_taxid": 307480, "relation_to_type": "type", "validated": true, "ani": 80.4355, "matched_fragments": 802, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 80.4266, "matched_fragments": 760, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 80.3786, "matched_fragments": 771, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 80.2916, "matched_fragments": 783, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lactis", "strain": "strain=NCTC11390", "accession": "GCA_002899875.1", "taxid": 1241981, "species_taxid": 1241981, "relation_to_type": "type", "validated": true, "ani": 80.1941, "matched_fragments": 793, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.531, "matched_fragments": 168, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.5268, "matched_fragments": 166, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" } ], 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001297705.1", "gtdb_species": "s__Chryseobacterium sp001297705", "ani": 87.0171, "matched_fragments": 1206, "total_fragments": 1622, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100115.1", "gtdb_species": "s__Chryseobacterium soldanellicola", "ani": 83.4192, "matched_fragments": 936, "total_fragments": 1622, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.189, "cell_length": 0.179, "doubling_h": null, "growth_tmp": 28.072, "optimum_tmp": 27.875, "optimum_ph": 6.92, "genome_size": 4222577.78, "gc_content": 39.236, "coding_genes": 3717.633, "rRNA16S_genes": 4.75, "tRNA_genes": 64.066, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.018, "range_salinity": 0.5, "facultative_respiration": 0.025, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.975, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.981, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.018, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "glaciei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }