{ "type": "genome", "identifier": "GCF_001648555.1", "organism": "Rossellomorea aquimaris TF-12", "title": "Rossellomorea aquimaris TF-12", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cinvestav-Irapuato", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001648555.1", "bioproject": "PRJNA224116", "biosample": "SAMN04403367", "wgs_master": "LQXM00000000.1", "refseq_category": "reference genome", "taxid": "1073842", "species_taxid": "189382", "organism_name": "Rossellomorea aquimaris TF-12", "infraspecific_name": "strain=TF12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/19", "asm_name": "ASM164855v1", "asm_submitter": "Cinvestav-Irapuato", "gbrs_paired_asm": "GCA_001648555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/648/555/GCF_001648555.1_ASM164855v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4035445", "genome_size_ungapped": "4035445", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001648555.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4148", "protein_coding_gene_count": "4001", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-19", "dateModified": "2016-05-19", "datePublished": "2016-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus aquimaris TF-12" ], "sample_taxid": [ "1073842" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea" ], "sample_host_location_id": [], "data_size": "1.142 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4035445", "Number of Sequences": "30", "Longest Sequences (bp)": "748481", "N50 (bp)": "415452", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "4065", "Average Protein Length": "275.2", "Coding Ratio (%)": "83.2", "Number of rRNAs": "9", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rossellomorea aquimaris", "strain": "strain=TF12", "accession": "GCA_001648555.1", "taxid": 189382, "species_taxid": 189382, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1306, "total_fragments": 1333, 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