{ "type": "genome", "identifier": "GCF_001648625.1", "organism": "Legionella micdadei", "title": "Legionella micdadei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001648625.1", "bioproject": "PRJNA224116", "biosample": "SAMN03486958", "wgs_master": "LCUB00000000.1", "refseq_category": "na", "taxid": "451", "species_taxid": "451", "organism_name": "Legionella micdadei", "infraspecific_name": "strain=ATCC 33218", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/19", "asm_name": "ASM164862v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "gbrs_paired_asm": "GCA_001648625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/648/625/GCF_001648625.1_ASM164862v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3279009", "genome_size_ungapped": "3278979", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001648625.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "2941", "protein_coding_gene_count": "2875", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-19", "dateModified": "2016-05-19", "datePublished": "2016-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella micdadei" ], "sample_taxid": [ "451" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "0.936 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3279009", "Number of Sequences": "27", "Longest Sequences (bp)": "471686", "N50 (bp)": "284775", "Gap Ratio (%)": "0.000915", "GCcontent (%)": "40.4", "Number of CDSs": "2912", "Average Protein Length": "333.2", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tatlockia micdadei", "strain": "strain=ATCC 33218", "accession": "GCA_001648625.1", "taxid": 451, "species_taxid": 451, 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