{ "type": "genome", "identifier": "GCF_001648675.1", "organism": "Legionella jordanis", "title": "Legionella jordanis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001648675.1", "bioproject": "PRJNA224116", "biosample": "SAMN03486956", "wgs_master": "LBAX00000000.1", "refseq_category": "na", "taxid": "456", "species_taxid": "456", "organism_name": "Legionella jordanis", "infraspecific_name": "strain=ATCC 33623", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/19", "asm_name": "ASM164867v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "gbrs_paired_asm": "GCA_001648675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/648/675/GCF_001648675.1_ASM164867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3087349", "genome_size_ungapped": "3087298", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001648675.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2838", "protein_coding_gene_count": "2775", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-19", "dateModified": "2016-05-19", "datePublished": "2016-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella jordanis" ], "sample_taxid": [ "456" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Bloomington, Indiana" ], "sample_host_location_id": [], "data_size": "0.880 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3087349", "Number of Sequences": "28", "Longest Sequences (bp)": "860415", "N50 (bp)": "305899", "Gap Ratio (%)": "0.001652", "GCcontent (%)": "41.7", "Number of CDSs": "2777", "Average Protein Length": "329.7", "Coding Ratio (%)": "89.0", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella jordanis", "strain": "strain=ATCC 33623", "accession": "GCA_001648675.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1013, "total_fragments": 1015, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=NCTC11533", "accession": "GCA_900637635.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9993, "matched_fragments": 1014, "total_fragments": 1015, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=BL-540", "accession": "GCA_001467765.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9943, "matched_fragments": 1011, "total_fragments": 1015, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 79.3241, 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"status": "below_threshold" }, { "organism_name": "Legionella taurinensis", "strain": "strain=NCTC13314", "accession": "GCA_900452865.1", "taxid": 70611, "species_taxid": 70611, "relation_to_type": "type", "validated": true, "ani": 77.236, "matched_fragments": 88, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.1759, "matched_fragments": 70, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.1431, "matched_fragments": 70, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016864235.1", "gtdb_species": "s__Legionella_C sp016864235", "ani": 79.0834, "matched_fragments": 96, "total_fragments": 1015, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002240035.1", "gtdb_species": "s__Tatlockia clemsonensis", "ani": 79.0625, "matched_fragments": 180, "total_fragments": 1015, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, 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