{ "type": "genome", "identifier": "GCF_001650025.1", "organism": "Devosia elaeis", "title": "Devosia elaeis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001650025.1", "bioproject": "PRJNA224116", "biosample": "SAMN04413744", "wgs_master": "LVVY00000000.1", "refseq_category": "reference genome", "taxid": "1770058", "species_taxid": "1770058", "organism_name": "Devosia elaeis", "infraspecific_name": "strain=S37", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/23", "asm_name": "De novo", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_001650025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/650/025/GCF_001650025.1_De_novo", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3878148", "genome_size_ungapped": "3878148", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "151", "contig_count": "151", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001650025.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3846", "protein_coding_gene_count": "3752", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-23", "dateModified": "2016-05-23", "datePublished": "2016-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Devosia elaeis" ], "sample_taxid": [ "1770058" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia: Temerloh, Pahang" ], "sample_host_location_id": [], "data_size": "1.077 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3878148", "Number of Sequences": "151", "Longest Sequences (bp)": "217062", "N50 (bp)": "65520", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3755", "Average Protein Length": "300.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Devosia elaeis", "strain": "strain=S37", "accession": "GCA_001650025.1", "taxid": 1770058, "species_taxid": 1770058, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1220, "total_fragments": 1226, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Devosia faecipullorum", "strain": "strain=CC-YST696", "accession": "GCA_015158295.1", "taxid": 2755039, "species_taxid": 2755039, "relation_to_type": "type", "validated": true, "ani": 84.289, "matched_fragments": 753, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia chinhatensis", "strain": "strain=IPL18", "accession": "GCA_000969445.1", "taxid": 429727, "species_taxid": 429727, "relation_to_type": "type", "validated": true, "ani": 83.526, "matched_fragments": 794, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia salina", "strain": "strain=SCS-3", "accession": "GCA_019504385.1", "taxid": 2860336, "species_taxid": 2860336, "relation_to_type": "type", "validated": true, "ani": 83.0795, "matched_fragments": 814, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia sediminis", "strain": "strain=MSA67", "accession": "GCA_016411825.1", "taxid": 2798801, "species_taxid": 2798801, "relation_to_type": "type", "validated": true, "ani": 82.8596, "matched_fragments": 807, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia equisanguinis", "strain": "strain=CIP 111628", "accession": "GCA_900631955.1", "taxid": 2490941, "species_taxid": 2490941, "relation_to_type": "type", "validated": true, "ani": 82.746, "matched_fragments": 761, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia indica", "strain": "strain=IO390501", "accession": "GCA_003056405.1", "taxid": 2079253, "species_taxid": 2079253, "relation_to_type": "type", "validated": true, "ani": 82.096, "matched_fragments": 779, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia marina", "strain": "strain=L53-10-65", "accession": "GCA_009758415.1", "taxid": 2683198, "species_taxid": 2683198, "relation_to_type": "type", "validated": true, "ani": 81.8471, "matched_fragments": 751, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia lucknowensis", "strain": "strain=L15", "accession": "GCA_900177655.1", "taxid": 1096929, "species_taxid": 1096929, "relation_to_type": "type", "validated": true, "ani": 81.6562, "matched_fragments": 734, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia subaequoris", "strain": "strain=HST3-14", "accession": "GCA_024158985.1", "taxid": 395930, "species_taxid": 395930, "relation_to_type": "type", "validated": true, "ani": 81.3113, "matched_fragments": 711, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia rhizoryzae", "strain": "strain=LEGU1", "accession": "GCA_016698665.1", "taxid": 2774137, "species_taxid": 2774137, "relation_to_type": "type", "validated": true, "ani": 81.2257, "matched_fragments": 662, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia beringensis", "strain": "strain=S02", "accession": "GCA_014926585.1", "taxid": 2657486, "species_taxid": 2657486, "relation_to_type": "type", "validated": true, "ani": 80.7794, "matched_fragments": 695, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia oryziradicis", "strain": "strain=G19", "accession": "GCA_016698645.1", "taxid": 2801335, "species_taxid": 2801335, "relation_to_type": "type", "validated": true, "ani": 80.7402, "matched_fragments": 640, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia crocina", "strain": "strain=IPL20", "accession": "GCA_900116545.1", "taxid": 429728, "species_taxid": 429728, "relation_to_type": "type", "validated": true, "ani": 80.2138, "matched_fragments": 595, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaustia mangrovi", "strain": "strain=R1DC25", "accession": "GCA_015482775.1", "taxid": 2593653, "species_taxid": 2593653, "relation_to_type": "type", "validated": true, "ani": 76.5084, "matched_fragments": 169, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella aquimarina", "strain": "strain=LMG 24711", "accession": "GCA_002088975.1", "taxid": 545261, "species_taxid": 545261, "relation_to_type": "type", "validated": true, "ani": 76.236, "matched_fragments": 85, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovibrio sulfidiphilus", "strain": "strain=DSM 23193", "accession": "GCA_014861485.1", "taxid": 1220600, "species_taxid": 1220600, "relation_to_type": "type", "validated": true, "ani": 76.1759, "matched_fragments": 55, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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