{
    "type": "genome",
    "identifier": "GCF_001650695.1",
    "organism": "Chloroflexus islandicus",
    "title": "Chloroflexus islandicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001650695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04851315",
        "wgs_master": "LWQS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1707952",
        "species_taxid": "1707952",
        "organism_name": "Chloroflexus islandicus",
        "infraspecific_name": "strain=isl-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/24",
        "asm_name": "ASM165069v1",
        "asm_submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "GCA_001650695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/650/695/GCF_001650695.1_ASM165069v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5136885",
        "genome_size_ungapped": "5136488",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "125",
        "contig_count": "125",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001650695.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4035",
        "protein_coding_gene_count": "3940",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-24",
    "dateModified": "2016-05-24",
    "datePublished": "2016-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chloroflexus islandicus"
        ],
        "sample_taxid": [
            "1707952"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iceland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.430 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 54.0,
            "max": 54.0
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5136885",
        "Number of Sequences": "125",
        "Longest Sequences (bp)": "331829",
        "N50 (bp)": "98351",
        "Gap Ratio (%)": "0.007728",
        "GCcontent (%)": "60.6",
        "Number of CDSs": "4067",
        "Average Protein Length": "352.2",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "14"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chloroflexus islandicus",
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                "accession": "GCA_001650695.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1654,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chloroflexus aggregans",
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                "accession": "GCA_000021945.1",
                "taxid": 152260,
                "species_taxid": 152260,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7953,
                "matched_fragments": 836,
                "total_fragments": 1658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chloroflexus aurantiacus",
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                "species_taxid": 1108,
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                "ani": 78.1438,
                "matched_fragments": 620,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseiflexus castenholzii",
                "strain": "strain=DSM 13941",
                "accession": "GCA_000017805.1",
                "taxid": 120962,
                "species_taxid": 120962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1987,
                "matched_fragments": 127,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillochloris trichoides",
                "strain": "strain=DG-6",
                "accession": "GCA_000152145.1",
                "taxid": 104176,
                "species_taxid": 104176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.123,
                "matched_fragments": 162,
                "total_fragments": 1658,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001650695.1",
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                "matched_fragments": 1654,
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000021945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000018865.1",
                "gtdb_species": "s__Chloroflexus aurantiacus",
                "ani": 78.138,
                "matched_fragments": 621,
                "total_fragments": 1658,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000516515.1",
                "gtdb_species": "s__Chloroflexus sp000516515",
                "ani": 77.4512,
                "matched_fragments": 424,
                "total_fragments": 1658,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.29",
                "min_intra_species_ani": "95.23",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000735195.1",
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                "matched_fragments": 424,
                "total_fragments": 1658,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
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                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_013388805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__JACAEO01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_004138175.2",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903887465.1",
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            },
            {
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            },
            {
                "accession": "GCA_012031775.1",
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            },
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                "mean_intra_species_ani": "98.25",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.088,
        "cell_length": null,
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        "growth_tmp": 53.166,
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        "genome_size": 5136890.0,
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        "coding_genes": 3779.166,
        "rRNA16S_genes": 3.0,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "islandicus"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}