{ "type": "genome", "identifier": "GCF_001651825.1", "organism": "Dietzia timorensis", "title": "Dietzia timorensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001651825.1", "bioproject": "PRJNA224116", "biosample": "SAMN04219460", "wgs_master": "LMTB00000000.1", "refseq_category": "na", "taxid": "499555", "species_taxid": "499555", "organism_name": "Dietzia timorensis", "infraspecific_name": "strain=ID05-A0528", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/25", "asm_name": "ASM165182v1", "asm_submitter": "Peking University", "gbrs_paired_asm": "GCA_001651825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/651/825/GCF_001651825.1_ASM165182v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3430606", "genome_size_ungapped": "3428606", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "164", "contig_count": "164", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-12", "total_gene_count": "3278", "protein_coding_gene_count": "3166", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-25", "dateModified": "2016-05-25", "datePublished": "2016-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Dietzia timorensis" ], "sample_taxid": [ "499555" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indonesia: West Timor" ], "sample_host_location_id": [], "data_size": "0.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3430606", "Number of Sequences": "164", "Longest Sequences (bp)": "267552", "N50 (bp)": "40546", "Gap Ratio (%)": "0.058299", "GCcontent (%)": "65.3", "Number of CDSs": "3104", "Average Protein Length": "309.4", "Coding Ratio (%)": "84.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dietzia timorensis", "strain": "strain=ID05-A0528", "accession": "GCA_001651825.1", "taxid": 499555, "species_taxid": 499555, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1054, "total_fragments": 1061, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dietzia timorensis", "strain": "strain=ID05-A0528", "accession": "GCA_001659785.1", "taxid": 499555, "species_taxid": 499555, "relation_to_type": "type", "validated": true, "ani": 99.9821, "matched_fragments": 1049, "total_fragments": 1061, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dietzia maris", "strain": "strain=IMV 195T", "accession": "GCA_014144855.1", "taxid": 37915, "species_taxid": 37915, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4571, "matched_fragments": 234, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia lutea", "strain": "strain=YIM 80766", "accession": "GCA_009806405.1", "taxid": 546160, "species_taxid": 546160, "relation_to_type": "type", "validated": true, "ani": 78.3199, "matched_fragments": 220, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia lutea", "strain": "strain=YIM 80766", "accession": "GCA_003096075.1", "taxid": 546160, "species_taxid": 546160, "relation_to_type": "type", "validated": true, "ani": 78.2122, "matched_fragments": 308, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia kunjamensis", "strain": "strain=K30-10T", "accession": "GCA_014144965.1", "taxid": 322509, "species_taxid": 322509, "relation_to_type": "type", "validated": true, "ani": 78.172, "matched_fragments": 235, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia massiliensis", "strain": "strain=Marseille-Q0999", "accession": "GCA_018390595.1", "taxid": 2697499, "species_taxid": 2697499, "relation_to_type": "type", "validated": true, "ani": 78.0429, "matched_fragments": 301, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia psychralcaliphila", "strain": "strain=DSM 44820", "accession": "GCA_003046525.1", 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