{ "type": "genome", "identifier": "GCF_001652445.1", "organism": "Thalassotalea crassostreae", "title": "Thalassotalea crassostreae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001652445.1", "bioproject": "PRJNA224116", "biosample": "SAMN04394586", "wgs_master": "LRUI00000000.1", "refseq_category": "na", "taxid": "1763536", "species_taxid": "1763536", "organism_name": "Thalassotalea crassostreae", "infraspecific_name": "strain=LPB0090", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/02", "asm_name": "ASM165244v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001652445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/652/445/GCF_001652445.1_ASM165244v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3819237", "genome_size_ungapped": "3819098", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-17", "total_gene_count": "3337", "protein_coding_gene_count": "3253", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-02", "dateModified": "2016-05-02", "datePublished": "2016-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassotalea crassostreae" ], "sample_taxid": [ "1763536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Ganghwa" ], "sample_host_location_id": [], "data_size": "1.084 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3819237", "Number of Sequences": "47", "Longest Sequences (bp)": "382039", "N50 (bp)": "192986", "Gap Ratio (%)": "0.003639", "GCcontent (%)": "38.7", "Number of CDSs": "3277", "Average Protein Length": "340.0", "Coding Ratio (%)": "87.5", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001652445.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1245, "total_fragments": 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"organism_name": "Thalassotalea agarivorans", "strain": "strain=DSM 19706", "accession": "GCA_900111755.1", "taxid": 349064, "species_taxid": 349064, "relation_to_type": "type", "validated": true, "ani": 78.3458, "matched_fragments": 101, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 78.1059, "matched_fragments": 139, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocolwellia agarivorans", "strain": "strain=QM50", "accession": "GCA_002000085.1", "taxid": 1911682, "species_taxid": 1911682, "relation_to_type": "type", "validated": true, "ani": 78.0663, "matched_fragments": 132, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 78.021, "matched_fragments": 117, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea marina", "strain": "strain=KCTC 42731", "accession": "GCA_014656435.1", "taxid": 1673741, "species_taxid": 1673741, "relation_to_type": "type", "validated": true, "ani": 78.0122, "matched_fragments": 115, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea profundi", "strain": "strain=CGMCC 1.15922", "accession": "GCA_014653195.1", "taxid": 2036687, "species_taxid": 2036687, "relation_to_type": "type", "validated": true, "ani": 77.7481, "matched_fragments": 119, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea piscium", "strain": "strain=DSM 26287", "accession": 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