{
    "type": "genome",
    "identifier": "GCF_001652705.1",
    "organism": "Christensenella minuta",
    "title": "Christensenella minuta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UC Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001652705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04633401",
        "wgs_master": "LWGY00000000.1",
        "refseq_category": "na",
        "taxid": "626937",
        "species_taxid": "626937",
        "organism_name": "Christensenella minuta",
        "infraspecific_name": "strain=DSM 22607",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/26",
        "asm_name": "ASM165270v1",
        "asm_submitter": "UC Davis",
        "gbrs_paired_asm": "GCA_001652705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/652/705/GCF_001652705.1_ASM165270v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2937150",
        "genome_size_ungapped": "2937150",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-04",
        "total_gene_count": "2854",
        "protein_coding_gene_count": "2761",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-26",
    "dateModified": "2016-05-26",
    "datePublished": "2016-05-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Christensenella minuta"
        ],
        "sample_taxid": [
            "626937"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.834 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2937150",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "734052",
        "N50 (bp)": "148400",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.5",
        "Number of CDSs": "2780",
        "Average Protein Length": "312.5",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Christensenella minuta",
                "strain": "strain=DSM 22607",
                "accession": "GCA_001652705.1",
                "taxid": 626937,
                "species_taxid": 626937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 957,
                "total_fragments": 961,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Christensenella minuta",
                "strain": "strain=DSM 22607",
                "accession": "GCA_003628755.1",
                "taxid": 626937,
                "species_taxid": 626937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9918,
                "matched_fragments": 960,
                "total_fragments": 961,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Christensenella minuta",
                "strain": "strain=DSM 22607",
                "accession": "GCA_001678855.1",
                "taxid": 626937,
                "species_taxid": 626937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9886,
                "matched_fragments": 945,
                "total_fragments": 961,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Christensenella minuta",
                "strain": "strain=DSM 22607",
                "accession": "GCA_001571425.1",
                "taxid": 626937,
                "species_taxid": 626937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.985,
                "matched_fragments": 935,
                "total_fragments": 961,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Christensenella intestinihominis",
                "strain": "strain=AF73-05CM02",
                "accession": "GCA_001678845.1",
                "taxid": 1851429,
                "species_taxid": 1851429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4981,
                "matched_fragments": 670,
                "total_fragments": 961,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003628755.1",
                "gtdb_species": "s__Christensenella minuta",
                "ani": 99.9918,
                "matched_fragments": 960,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014287795.1",
                "gtdb_species": "s__Christensenella sp014287795",
                "ani": 83.7817,
                "matched_fragments": 584,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001678845.1",
                "gtdb_species": "s__Christensenella intestinihominis",
                "ani": 83.4939,
                "matched_fragments": 669,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900155415.1",
                "gtdb_species": "s__Christensenella massiliensis",
                "ani": 80.05,
                "matched_fragments": 414,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000981035.1",
                "gtdb_species": "s__Christensenella hongkongensis",
                "ani": 79.9345,
                "matched_fragments": 263,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900087015.1",
                "gtdb_species": "s__Christensenella timonensis",
                "ani": 79.743,
                "matched_fragments": 226,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Christensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": 2931272.0,
        "gc_content": 50.4,
        "coding_genes": 2428.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.0,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Christensenella",
        "minuta"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}