{
    "type": "genome",
    "identifier": "GCF_001653565.1",
    "organism": "Paenibacillus oryzisoli",
    "title": "Paenibacillus oryzisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of agricultural Sciences(CAAS)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001653565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05006722",
        "wgs_master": "LYPB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1850517",
        "species_taxid": "1850517",
        "organism_name": "Paenibacillus oryzisoli",
        "infraspecific_name": "strain=1ZS3-15",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/31",
        "asm_name": "ASM165356v1",
        "asm_submitter": "Chinese Academy of agricultural Sciences(CAAS)",
        "gbrs_paired_asm": "GCA_001653565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/653/565/GCF_001653565.1_ASM165356v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8311090",
        "genome_size_ungapped": "8308928",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "97",
        "contig_count": "97",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001653565.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "7077",
        "protein_coding_gene_count": "6906",
        "non_coding_gene_count": "114",
        "pubmed_id": "27734255"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-31",
    "dateModified": "2016-05-31",
    "datePublished": "2016-05-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus oryzisoli"
        ],
        "sample_taxid": [
            "1850517"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hunan"
        ],
        "sample_host_location_id": [],
        "data_size": "2.380 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 30.0,
            "max": 30.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8311090",
        "Number of Sequences": "97",
        "Longest Sequences (bp)": "526390",
        "N50 (bp)": "185542",
        "Gap Ratio (%)": "0.026194",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "7058",
        "Average Protein Length": "345.5",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "96",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus oryzisoli",
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                "accession": "GCA_001653565.1",
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                "species_taxid": 1850517,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2719,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus plantarum",
                "strain": "strain=LMG 31461",
                "accession": "GCA_013141695.1",
                "taxid": 2654975,
                "species_taxid": 2654975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4003,
                "matched_fragments": 1977,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pectinilyticus",
                "strain": "strain=KCTC13222",
                "accession": "GCA_001700435.1",
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                "species_taxid": 512399,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3603,
                "matched_fragments": 1225,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus phytorum",
                "strain": "strain=LMG 31458",
                "accession": "GCA_013141715.1",
                "taxid": 2654977,
                "species_taxid": 2654977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5462,
                "matched_fragments": 802,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus germinis",
                "strain": "strain=LMG 31460",
                "accession": "GCA_013141785.1",
                "taxid": 2654979,
                "species_taxid": 2654979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5321,
                "matched_fragments": 809,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alginolyticus",
                "strain": "strain=DSM 5050",
                "accession": "GCA_000422905.1",
                "taxid": 59839,
                "species_taxid": 59839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4949,
                "matched_fragments": 773,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus marchantiophytorum",
                "strain": "strain=CGMCC 1.15043",
                "accession": "GCA_014640555.1",
                "taxid": 1619310,
                "species_taxid": 1619310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3931,
                "matched_fragments": 780,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ferrarius",
                "strain": "strain=CY1",
                "accession": "GCA_002027705.1",
                "taxid": 1469647,
                "species_taxid": 1469647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0491,
                "matched_fragments": 807,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceris",
                "strain": "strain=DSM 24950",
                "accession": "GCA_017874035.1",
                "taxid": 869555,
                "species_taxid": 869555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9655,
                "matched_fragments": 730,
                "total_fragments": 2724,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_001653565.1",
                "gtdb_species": "s__Paenibacillus_E oryzisoli",
                "ani": 100.0,
                "matched_fragments": 2719,
                "total_fragments": 2724,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_013204845.1",
                "gtdb_species": "s__Paenibacillus_E qinlingensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001428105.1",
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                "matched_fragments": 1761,
                "total_fragments": 2724,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013141695.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001428045.1",
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                "total_fragments": 2724,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
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        "growth_tmp": 30.106,
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        "genome_size": 6197949.921,
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        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
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        "mesophilic_range_tmp": 0.9,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "oryzisoli"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}