{
    "type": "genome",
    "identifier": "GCF_001654835.1",
    "organism": "Buttiauxella gaviniae ATCC 51604",
    "title": "Buttiauxella gaviniae ATCC 51604",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001654835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04870320",
        "wgs_master": "LXEP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1354253",
        "species_taxid": "82990",
        "organism_name": "Buttiauxella gaviniae ATCC 51604",
        "infraspecific_name": "strain=ATCC 51604",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/06/02",
        "asm_name": "Bga51604_DRAFTv1",
        "asm_submitter": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)",
        "gbrs_paired_asm": "GCA_001654835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/654/835/GCF_001654835.1_Bga51604_DRAFTv1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5068083",
        "genome_size_ungapped": "5068083",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "133",
        "contig_count": "133",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001654835.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "4881",
        "protein_coding_gene_count": "4670",
        "non_coding_gene_count": "88",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-06-02",
    "dateModified": "2016-06-02",
    "datePublished": "2016-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Buttiauxella gaviniae ATCC 51604"
        ],
        "sample_taxid": [
            "1354253"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.446 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5068083",
        "Number of Sequences": "133",
        "Longest Sequences (bp)": "493486",
        "N50 (bp)": "223564",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.4",
        "Number of CDSs": "4648",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Buttiauxella gaviniae",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1638,
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            },
            {
                "organism_name": "Buttiauxella massiliensis",
                "strain": "strain=Marseille-P9829",
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                "taxid": 2831590,
                "species_taxid": 2831590,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Buttiauxella noackiae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Buttiauxella brennerae",
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                "species_taxid": 82988,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Buttiauxella agrestis",
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                "species_taxid": 82977,
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                "ani": 87.0687,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Buttiauxella izardii",
                "strain": "strain=CCUG 35510",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Buttiauxella ferragutiae",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Buttiauxella warmboldiae",
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            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
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                "species_taxid": 2891570,
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                "validated": true,
                "ani": 79.8922,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter cloacae",
                "strain": "strain=DSM 30054",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_024519395.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
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                "ani": 79.425,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_001654835.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "ATCC",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}