{ "type": "genome", "identifier": "GCF_001654845.1", "organism": "Enterobacter soli ATCC BAA-2102", "title": "Enterobacter soli ATCC BAA-2102", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001654845.1", "bioproject": "PRJNA224116", "biosample": "SAMN04875425", "wgs_master": "LXES00000000.1", "refseq_category": "na", "taxid": "1354262", "species_taxid": "885040", "organism_name": "Enterobacter soli ATCC BAA-2102", "infraspecific_name": "strain=ATCC BAA-2102", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/02", "asm_name": "EsoBAA2102_DRAFTv1", "asm_submitter": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "gbrs_paired_asm": "GCA_001654845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/654/845/GCF_001654845.1_EsoBAA2102_DRAFTv1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4960767", "genome_size_ungapped": "4960767", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001654845.1-RS_2024_05_11", "annotation_date": "2024-05-11", "total_gene_count": "4754", "protein_coding_gene_count": "4614", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-02", "dateModified": "2016-06-02", "datePublished": "2016-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter soli ATCC BAA-2102" ], "sample_taxid": [ "1354262" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru" ], "sample_host_location_id": [], "data_size": "1.412 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4960767", "Number of Sequences": "74", "Longest Sequences (bp)": "364340", "N50 (bp)": "152863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "4636", "Average Protein Length": "317.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter soli", "strain": "strain=ATCC BAA-2102", "accession": "GCA_001654845.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1617, "total_fragments": 1620, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter soli", "strain": "", "accession": "GCA_900185935.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 99.9986, "matched_fragments": 1618, "total_fragments": 1620, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 87.1414, "matched_fragments": 1206, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 86.9125, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 86.6259, "matched_fragments": 1211, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 86.5879, "matched_fragments": 1209, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 86.5838, "matched_fragments": 1203, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 86.4901, "matched_fragments": 1246, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_000818595.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 86.4435, "matched_fragments": 1230, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_001750725.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 86.4435, "matched_fragments": 1230, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": 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"strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.3414, "matched_fragments": 1171, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_000213995.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.2971, "matched_fragments": 1176, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 86.291, "matched_fragments": 1193, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634515.1", "gtdb_species": "s__Enterobacter asburiae_A", "ani": 86.894, "matched_fragments": 1227, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.0274, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003046225.1", "gtdb_species": "s__Enterobacter cloacae_I", "ani": 86.8856, "matched_fragments": 1214, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_008080435.1", "gtdb_species": "s__Enterobacter asburiae_C", "ani": 86.8715, "matched_fragments": 1213, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.5575, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003594935.1", "gtdb_species": "s__Enterobacter huaxiensis", "ani": 86.8712, "matched_fragments": 1247, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", 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