{ "type": "genome", "identifier": "GCF_001654985.1", "organism": "Kluyvera georgiana ATCC 51603", "title": "Kluyvera georgiana ATCC 51603", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001654985.1", "bioproject": "PRJNA224116", "biosample": "SAMN04875430", "wgs_master": "LXEU00000000.1", "refseq_category": "na", "taxid": "1354264", "species_taxid": "73098", "organism_name": "Kluyvera georgiana ATCC 51603", "infraspecific_name": "strain=ATCC 51603", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/02", "asm_name": "Kge51603_DRAFTv1", "asm_submitter": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "gbrs_paired_asm": "GCA_001654985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/654/985/GCF_001654985.1_Kge51603_DRAFTv1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5068984", "genome_size_ungapped": "5068984", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "163", "contig_count": "163", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001654985.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "4958", "protein_coding_gene_count": "4715", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-02", "dateModified": "2016-06-02", "datePublished": "2016-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Kluyvera georgiana ATCC 51603" ], "sample_taxid": [ "1354264" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "1.444 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5068984", "Number of Sequences": "163", "Longest Sequences (bp)": "244645", "N50 (bp)": "88801", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.5", "Number of CDSs": "4738", "Average Protein Length": "309.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "4", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kluyvera georgiana", "strain": "strain=ATCC 51603", "accession": "GCA_001654985.1", "taxid": 73098, "species_taxid": 73098, 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85.6117, "matched_fragments": 1160, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera intermedia", "strain": "strain=NBRC 102594", "accession": "GCA_001598315.1", "taxid": 61648, "species_taxid": 61648, "relation_to_type": "suspected-type", "validated": true, "ani": 85.1039, "matched_fragments": 1105, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 83.1042, "matched_fragments": 994, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 82.9697, "matched_fragments": 953, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.431, "matched_fragments": 870, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 82.0573, "matched_fragments": 886, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. steigerwaltii", "strain": "strain=DSM 16691", "accession": "GCA_001729725.1", "taxid": 299766, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 82.0152, "matched_fragments": 865, "total_fragments": 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 5006140.0, "gc_content": 55.0, "coding_genes": 2237.0, "rRNA16S_genes": 7.0, "tRNA_genes": 87.0, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.5, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kluyvera", "georgiana", "ATCC", "51603" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }