{ "type": "genome", "identifier": "GCF_001655055.1", "organism": "Providencia heimbachae ATCC 35613", "title": "Providencia heimbachae ATCC 35613", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001655055.1", "bioproject": "PRJNA224116", "biosample": "SAMN04875434", "wgs_master": "LXEW00000000.1", "refseq_category": "na", "taxid": "1354272", "species_taxid": "333962", "organism_name": "Providencia heimbachae ATCC 35613", "infraspecific_name": "strain=ATCC 35613", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/02", "asm_name": "Phe35613_DRAFTv1", "asm_submitter": "UW-GEL (University of Wisconsin - Genome Evolution Laboratory)", "gbrs_paired_asm": "GCA_001655055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/655/055/GCF_001655055.1_Phe35613_DRAFTv1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4205997", "genome_size_ungapped": "4205997", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001655055.1-RS_2024_09_23", "annotation_date": "2024-09-23", "total_gene_count": "3860", "protein_coding_gene_count": "3748", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-02", "dateModified": "2016-06-02", "datePublished": "2016-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Providencia heimbachae ATCC 35613" ], "sample_taxid": [ "1354272" ], "sample_host_organism": [ "Spheniscidae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.199 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4205997", "Number of Sequences": "74", "Longest Sequences (bp)": "321364", "N50 (bp)": "138730", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "3770", "Average Protein Length": "314.4", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Providencia heimbachae", "strain": "strain=ATCC 35613", "accession": "GCA_001655055.1", "taxid": 333962, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Providencia sneebia", "strain": "strain=DSM 19967", "accession": "GCA_000314895.2", "taxid": 516075, "species_taxid": 516075, "relation_to_type": "type", "validated": true, "ani": 79.7228, "matched_fragments": 533, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenophonus apicola", "strain": "strain=ArsBeeUS", "accession": "GCA_020268605.1", "taxid": 2879119, "species_taxid": 2879119, "relation_to_type": "type", "validated": true, "ani": 77.9734, "matched_fragments": 112, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001655055.1", "gtdb_species": "s__Providencia heimbachae", "ani": 100.0, "matched_fragments": 1374, "total_fragments": 1376, "gtdb_taxonomy": 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