{
    "type": "genome",
    "identifier": "GCF_001659685.2",
    "organism": "Labilibacter marinus",
    "title": "Labilibacter marinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001659685.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05003866",
        "wgs_master": "LXYE00000000.2",
        "refseq_category": "reference genome",
        "taxid": "1477105",
        "species_taxid": "1477105",
        "organism_name": "Labilibacter marinus",
        "infraspecific_name": "strain=Y11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/06",
        "asm_name": "ASM165968v2",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_001659685.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/685/GCF_001659685.2_ASM165968v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6026579",
        "genome_size_ungapped": "6026579",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "81",
        "contig_count": "81",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001659685.2-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4637",
        "protein_coding_gene_count": "4570",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-06",
    "dateModified": "2017-01-06",
    "datePublished": "2017-01-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Labilibacter marinus"
        ],
        "sample_taxid": [
            "1477105"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Weihai, Shandong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.701 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6026579",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "416440",
        "N50 (bp)": "154838",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "4591",
        "Average Protein Length": "381.1",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Labilibacter marinus",
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                "relation_to_type": "type",
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                "matched_fragments": 1966,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Labilibacter sediminis",
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                "accession": "GCA_005877885.1",
                "taxid": 2570926,
                "species_taxid": 2570926,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 369,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis fermentans",
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                "accession": "GCA_000517085.1",
                "taxid": 982,
                "species_taxid": 982,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis fermentans",
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                "accession": "GCA_000583675.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 349,
                "total_fragments": 1970,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis aurantiacus",
                "strain": "strain=HQYD1",
                "accession": "GCA_001660705.2",
                "taxid": 1849719,
                "species_taxid": 1849719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.001,
                "matched_fragments": 301,
                "total_fragments": 1970,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001659685.2",
                "gtdb_species": "s__Saccharicrinis marinus",
                "ani": 100.0,
                "matched_fragments": 1966,
                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Saccharicrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005877885.1",
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                "total_fragments": 1970,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000517085.1",
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                "ani": 78.0961,
                "matched_fragments": 359,
                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Saccharicrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001660705.2",
                "gtdb_species": "s__Saccharicrinis aurantiacus",
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                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Saccharicrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900182605.1",
                "gtdb_species": "s__Saccharicrinis carchari",
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                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Saccharicrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_018271995.1",
                "gtdb_species": "s__Carboxylicivirga linearis",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
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                "status": "-"
            },
            {
                "accession": "GCA_003249255.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__SZUA-582",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009669305.1",
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                "ani": 76.1493,
                "matched_fragments": 78,
                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Ancylomarina",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016406085.1",
                "gtdb_species": "s__Aureibaculum sp016406085",
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                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Labilibacter",
        "marinus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}