{ "type": "genome", "identifier": "GCF_001661675.2", "organism": "Croceicoccus marinus", "title": "Croceicoccus marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001661675.2", "bioproject": "PRJNA224116", "biosample": "SAMN05176185", "wgs_master": "na", "refseq_category": "na", "taxid": "450378", "species_taxid": "450378", "organism_name": "Croceicoccus marinus", "infraspecific_name": "strain=E4A9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/13", "asm_name": "ASM166167v2", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001661675.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/675/GCF_001661675.2_ASM166167v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4109188", "genome_size_ungapped": "4109188", "gc_percent": "64.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-17", "total_gene_count": "3916", "protein_coding_gene_count": "3761", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-13", "dateModified": "2017-06-13", "datePublished": "2017-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceicoccus marinus" ], "sample_taxid": [ "450378" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean:East Pacific polymetallic nodule region" ], "sample_host_location_id": [], "data_size": "1.130 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4109188", "Number of Sequences": "3", "Longest Sequences (bp)": "3001363", "N50 (bp)": "3001363", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3858", "Average Protein Length": "316.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceicoccus marinus", "strain": "strain=E4A9", "accession": "GCA_001661675.2", "taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus ponticola", "strain": "strain=GM-16", "accession": "GCA_004004515.1", "taxid": 2217664, "species_taxid": 2217664, "relation_to_type": "type", "validated": true, "ani": 79.3314, "matched_fragments": 446, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.8884, "matched_fragments": 369, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.741, "matched_fragments": 352, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 78.7194, "matched_fragments": 380, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 78.4214, "matched_fragments": 424, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 78.0078, "matched_fragments": 320, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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