{ "type": "genome", "identifier": "GCF_001661915.1", "organism": "Croceicoccus pelagius", "title": "Croceicoccus pelagius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001661915.1", "bioproject": "PRJNA224116", "biosample": "SAMN05176186", "wgs_master": "LYWY00000000.1", "refseq_category": "reference genome", "taxid": "1703341", "species_taxid": "1703341", "organism_name": "Croceicoccus pelagius", "infraspecific_name": "strain=Ery9", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/13", "asm_name": "ASM166191v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001661915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/661/915/GCF_001661915.1_ASM166191v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3306530", "genome_size_ungapped": "3306478", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001661915.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3255", "protein_coding_gene_count": "3141", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-13", "dateModified": "2016-06-13", "datePublished": "2016-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceicoccus pelagius" ], "sample_taxid": [ "1703341" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.1379, "matched_fragments": 246, "total_fragments": 1084, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001661915.1", "gtdb_species": "s__Croceicoccus pelagius", "ani": 100.0, "matched_fragments": 1081, "total_fragments": 1084, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018398395.1", 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