{ "type": "genome", "identifier": "GCF_001663155.1", "organism": "Altererythrobacter ishigakiensis", "title": "Altererythrobacter ishigakiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001663155.1", "bioproject": "PRJNA224116", "biosample": "SAMN04870883", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "476157", "species_taxid": "476157", "organism_name": "Altererythrobacter ishigakiensis", "infraspecific_name": "strain=NBRC 107699", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/15", "asm_name": "ASM166315v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001663155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/663/155/GCF_001663155.1_ASM166315v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2673978", "genome_size_ungapped": "2673978", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001663155.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2588", "protein_coding_gene_count": "2536", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-15", "dateModified": "2016-06-15", "datePublished": "2016-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Altererythrobacter ishigakiensis" ], "sample_taxid": [ "476157" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: coast of Ishigaki island, Okinawa" ], "sample_host_location_id": [], "data_size": "0.758 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2673978", "Number of Sequences": "1", "Longest Sequences (bp)": "2673978", "N50 (bp)": "2673978", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "2564", "Average Protein Length": "319.8", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Altererythrobacter ishigakiensis", "strain": "strain=NBRC 107699", "accession": "GCA_001663155.1", "taxid": 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77.7862, "matched_fragments": 221, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 77.7114, "matched_fragments": 238, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.5832, "matched_fragments": 242, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=DSM 11032", "accession": "GCA_900143235.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.5489, "matched_fragments": 239, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.4409, "matched_fragments": 173, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.4111, "matched_fragments": 219, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 77.3298, "matched_fragments": 221, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.3198, "matched_fragments": 219, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 77.303, "matched_fragments": 165, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 77.288, "matched_fragments": 226, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter insulae", "strain": "strain=JBTF-M21", "accession": "GCA_007004095.1", "taxid": 2584124, "species_taxid": 2584124, "relation_to_type": "type", "validated": true, "ani": 77.251, "matched_fragments": 179, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis soli", "strain": "strain=BL03", "accession": "GCA_018682675.1", "taxid": 592051, "species_taxid": 592051, "relation_to_type": "type", "validated": true, "ani": 76.8394, "matched_fragments": 82, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001663155.1", "gtdb_species": "s__Erythrobacter ishigakiensis", "ani": 100.0, "matched_fragments": 891, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, 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