{ "type": "genome", "identifier": "GCF_001676705.1", "organism": "Bordetella bronchialis", "title": "Bordetella bronchialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Michigan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001676705.1", "bioproject": "PRJNA224116", "biosample": "SAMN05257177", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "463025", "species_taxid": "463025", "organism_name": "Bordetella bronchialis", "infraspecific_name": "strain=AU3182", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/27", "asm_name": "ASM167670v1", "asm_submitter": "University of Michigan", "gbrs_paired_asm": "GCA_001676705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/676/705/GCF_001676705.1_ASM167670v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5878756", "genome_size_ungapped": "5878756", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "5212", "protein_coding_gene_count": "5110", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-27", "dateModified": "2016-06-27", "datePublished": "2016-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Bordetella bronchialis" ], "sample_taxid": [ "463025" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Cystic Fibrosis" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5878756", "Number of Sequences": "1", "Longest Sequences (bp)": "5878756", "N50 (bp)": "5878756", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "5209", "Average Protein Length": "339.6", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bordetella bronchialis", "strain": "strain=AU3182", "accession": "GCA_001676705.1", "taxid": 463025, "species_taxid": 463025, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1958, 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