{ "type": "genome", "identifier": "GCF_001676875.1", "organism": "Chromobacterium subtsugae", "title": "Chromobacterium subtsugae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA-ARS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001676875.1", "bioproject": "PRJNA224116", "biosample": "SAMN03092257", "wgs_master": "JYKA00000000.1", "refseq_category": "na", "taxid": "251747", "species_taxid": "251747", "organism_name": "Chromobacterium subtsugae", "infraspecific_name": "strain=PRAA4-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/27", "asm_name": "ASM167687v1", "asm_submitter": "USDA-ARS", "gbrs_paired_asm": "GCA_001676875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/676/875/GCF_001676875.1_ASM167687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4805598", "genome_size_ungapped": "4805598", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001676875.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4657", "protein_coding_gene_count": "4553", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-27", "dateModified": "2016-06-27", "datePublished": "2016-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromobacterium subtsugae" ], "sample_taxid": [ "251747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Catoctin Mountain in Maryland" ], 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"status": "conclusive" }, { "organism_name": "Chromobacterium sphagni", "strain": "strain=IIBBL 14B-1", "accession": "GCA_001855555.1", "taxid": 1903179, "species_taxid": 1903179, "relation_to_type": "type", "validated": true, "ani": 88.5876, "matched_fragments": 1184, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium violaceum", "strain": "strain=NCTC9757", "accession": "GCA_900446805.1", "taxid": 536, "species_taxid": 536, "relation_to_type": "type", "validated": true, "ani": 88.0737, "matched_fragments": 1177, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium violaceum", "strain": "strain=ATCC 12472", "accession": "GCA_000007705.1", "taxid": 536, "species_taxid": 536, "relation_to_type": "type", "validated": true, "ani": 88.0663, "matched_fragments": 1164, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium vaccinii", "strain": "strain=MWU205", "accession": "GCA_000971335.1", "taxid": 1108595, "species_taxid": 1108595, "relation_to_type": "type", "validated": true, "ani": 87.9683, "matched_fragments": 1180, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 87.6641, "matched_fragments": 1120, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium phragmitis", "strain": "strain=IIBBL 112-1", "accession": "GCA_003325475.1", "taxid": 2202141, "species_taxid": 2202141, "relation_to_type": "type", "validated": true, "ani": 87.0588, "matched_fragments": 1127, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 86.6335, "matched_fragments": 1057, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 86.603, "matched_fragments": 1066, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alkanivorans", "strain": "strain=IITR-71", "accession": "GCA_016937655.1", "taxid": 1071719, "species_taxid": 1071719, "relation_to_type": "type", "validated": true, "ani": 84.0123, "matched_fragments": 983, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 83.5781, "matched_fragments": 921, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.2091, "matched_fragments": 430, "total_fragments": 1578, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001676875.1", "gtdb_species": "s__Chromobacterium subtsugae", "ani": 100.0, "matched_fragments": 1577, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, 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95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_000971335.1", "gtdb_species": "s__Chromobacterium vaccinii", "ani": 87.9646, "matched_fragments": 1181, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011601295.1", "gtdb_species": "s__Chromobacterium vaccinii_A", "ani": 87.689, "matched_fragments": 1200, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.84", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002848345.1", "gtdb_species": "s__Chromobacterium sp002848345", "ani": 87.4267, "matched_fragments": 1202, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003325475.1", "gtdb_species": "s__Chromobacterium phragmitis", "ani": 87.0356, "matched_fragments": 1130, "total_fragments": 1578, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Chromobacterium", "ani_circumscription_radius": 95.0, 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