{ "type": "genome", "identifier": "GCF_001677335.1", "organism": "Erythrobacter dokdonensis DSW-74", "title": "Erythrobacter dokdonensis DSW-74", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001677335.1", "bioproject": "PRJNA224116", "biosample": "SAMN03266125", "wgs_master": "LZYB00000000.1", "refseq_category": "na", "taxid": "1300349", "species_taxid": "328225", "organism_name": "Erythrobacter dokdonensis DSW-74", "infraspecific_name": "strain=DSW-74", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/28", "asm_name": "ASM167733v1", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_001677335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/677/335/GCF_001677335.1_ASM167733v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2995154", "genome_size_ungapped": "2995154", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-16", "total_gene_count": "2886", "protein_coding_gene_count": "2821", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-28", "dateModified": "2016-06-28", "datePublished": "2016-06-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter dokdonensis DSW-74" ], "sample_taxid": [ "1300349" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dokdo" ], "sample_host_location_id": [], "data_size": "0.827 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2995154", "Number of Sequences": "11", "Longest Sequences (bp)": "826927", "N50 (bp)": "500932", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "2815", "Average Protein Length": "325.3", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 992, 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"Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 79.1312, "matched_fragments": 399, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.1224, "matched_fragments": 389, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 79.0478, "matched_fragments": 401, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": 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