{ "type": "genome", "identifier": "GCF_001679005.1", "organism": "Moraxella nonliquefaciens", "title": "Moraxella nonliquefaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TAILORED-Treatment project", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001679005.1", "bioproject": "PRJNA224116", "biosample": "SAMN04994741", "wgs_master": "LXTW00000000.1", "refseq_category": "na", "taxid": "478", "species_taxid": "478", "organism_name": "Moraxella nonliquefaciens", "infraspecific_name": "strain=CCUG 348", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/05", "asm_name": "ASM167900v1", "asm_submitter": "TAILORED-Treatment project", "gbrs_paired_asm": "GCA_001679005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/679/005/GCF_001679005.1_ASM167900v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2279879", "genome_size_ungapped": "2277882", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001679005.1-RS_2024_12_25", "annotation_date": "2024-12-25", "total_gene_count": "2202", "protein_coding_gene_count": "2112", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-05", "dateModified": "2016-07-05", "datePublished": "2016-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Moraxella nonliquefaciens" ], "sample_taxid": [ "478" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: Oslo" ], "sample_host_location_id": [], "data_size": "0.635 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2279879", "Number of Sequences": "37", "Longest Sequences (bp)": "573714", "N50 (bp)": "357232", "Gap Ratio (%)": "0.087856", "GCcontent (%)": "41.9", "Number of CDSs": "2117", "Average Protein Length": "307.3", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Moraxella nonliquefaciens", "strain": "strain=CCUG 348", "accession": "GCA_001679005.1", "taxid": 478, "species_taxid": 478, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 745, "total_fragments": 745, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Moraxella nonliquefaciens", "strain": "strain=FDAARGOS_869", "accession": "GCA_016028775.1", "taxid": 478, "species_taxid": 478, "relation_to_type": "type", "validated": true, "ani": 99.9941, "matched_fragments": 743, "total_fragments": 745, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Moraxella lacunata", "strain": "strain=CCUG 4441", "accession": "GCA_002027545.1", "taxid": 477, "species_taxid": 477, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7067, "matched_fragments": 563, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella lacunata", "strain": "strain=NBRC 102154", "accession": "GCA_001591245.1", "taxid": 477, "species_taxid": 477, "relation_to_type": "suspected-type", "validated": true, "ani": 87.66, "matched_fragments": 509, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella caprae", "strain": "strain=NCTC12877", "accession": "GCA_900453285.1", "taxid": 90240, "species_taxid": 90240, "relation_to_type": "type", "validated": true, "ani": 84.2678, "matched_fragments": 563, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella caprae", "strain": "strain=DSM 19149", "accession": "GCA_000426885.1", "taxid": 90240, "species_taxid": 90240, "relation_to_type": "type", "validated": true, "ani": 84.2654, "matched_fragments": 536, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella equi", "strain": "strain=CCUG 4950", "accession": "GCA_002027555.1", "taxid": 60442, "species_taxid": 60442, "relation_to_type": "type", "validated": true, "ani": 84.045, "matched_fragments": 513, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella bovis", "strain": "strain=CCUG 2133", "accession": "GCA_002014975.1", "taxid": 476, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.6695, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001636015.1", "gtdb_species": "s__Moraxella ovis", "ani": 80.0345, "matched_fragments": 208, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.978, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.004, "cell_length": 0.117, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 34.125, "optimum_ph": null, "genome_size": 2452776.539, "gc_content": 43.879, "coding_genes": 2160.856, "rRNA16S_genes": 4.0, "tRNA_genes": 48.971, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.333, "coccus_cell_shape": 0.666, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Moraxella", "nonliquefaciens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }