{ "type": "genome", "identifier": "GCF_001680885.1", "organism": "Polaribacter vadi", "title": "Polaribacter vadi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001680885.1", "bioproject": "PRJNA224116", "biosample": "SAMN04390145", "wgs_master": "LSFM00000000.1", "refseq_category": "na", "taxid": "1774273", "species_taxid": "1774273", "organism_name": "Polaribacter vadi", "infraspecific_name": "strain=LPB0003", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/07", "asm_name": "ASM168088v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001680885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/680/885/GCF_001680885.1_ASM168088v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3798883", "genome_size_ungapped": "3798883", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001680885.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3342", "protein_coding_gene_count": "3284", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-07", "dateModified": "2016-07-07", "datePublished": "2016-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter vadi" ], "sample_taxid": [ "1774273" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3798883", "Number of Sequences": "28", "Longest Sequences (bp)": "935078", "N50 (bp)": "436405", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "3294", "Average Protein Length": "343.1", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1253, "total_fragments": 1254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 99.995, "matched_fragments": 1251, "total_fragments": 1254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=LMG 26443", "accession": "GCA_020532845.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 82.1728, "matched_fragments": 765, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 82.1664, "matched_fragments": 774, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 82.0982, "matched_fragments": 793, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 81.8403, "matched_fragments": 717, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 81.3806, "matched_fragments": 712, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 81.379, "matched_fragments": 724, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 81.1203, "matched_fragments": 682, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 80.9803, "matched_fragments": 704, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 80.8777, "matched_fragments": 733, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 80.8199, "matched_fragments": 670, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 80.6218, "matched_fragments": 667, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 80.5729, "matched_fragments": 671, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 80.414, "matched_fragments": 648, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001761365.1", "gtdb_species": "s__Polaribacter vadi", "ani": 99.995, "matched_fragments": 1251, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000687935.1", "gtdb_species": "s__Polaribacter sp000687935", "ani": 88.7956, "matched_fragments": 966, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975665.1", "gtdb_species": "s__Polaribacter reichenbachii", "ani": 82.213, "matched_fragments": 778, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018861005.1", "gtdb_species": 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