{ "type": "genome", "identifier": "GCF_001684955.1", "organism": "Chryseobacterium contaminans", "title": "Chryseobacterium contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001684955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05366335", "wgs_master": "MAYF00000000.1", "refseq_category": "na", "taxid": "1423959", "species_taxid": "1423959", "organism_name": "Chryseobacterium contaminans", "infraspecific_name": "strain=C-26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/13", "asm_name": "ASM168495v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001684955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/684/955/GCF_001684955.1_ASM168495v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4704265", "genome_size_ungapped": "4704265", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "366", "contig_count": "366", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001684955.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4398", "protein_coding_gene_count": "4212", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-13", "dateModified": "2016-07-13", "datePublished": "2016-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium contaminans" ], "sample_taxid": [ "1423959" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Alabama" ], "sample_host_location_id": [], "data_size": "1.324 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4704265", "Number of Sequences": "366", "Longest Sequences (bp)": "148990", "N50 (bp)": "25005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "3876", "Average Protein Length": "322.7", "Coding Ratio (%)": "79.8", "Number of rRNAs": "3", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium contaminans", "strain": "strain=C-26", "accession": "GCA_001684955.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1396, "total_fragments": 1405, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 99.9915, "matched_fragments": 1394, "total_fragments": 1405, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 88.5828, "matched_fragments": 1184, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 86.921, "matched_fragments": 1120, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 86.3022, "matched_fragments": 1142, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.8909, "matched_fragments": 1016, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.8585, "matched_fragments": 1023, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arthrosphaerae", "strain": "strain=CC-VM-7", "accession": "GCA_001684965.1", "taxid": 651561, "species_taxid": 651561, "relation_to_type": "type", "validated": true, "ani": 83.6001, "matched_fragments": 1005, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gallinarum", "strain": "strain=DSM 27622", "accession": "GCA_001021975.1", "taxid": 1324352, "species_taxid": 1324352, "relation_to_type": "type", "validated": true, "ani": 82.8408, "matched_fragments": 912, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.6353, "matched_fragments": 627, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.4914, "matched_fragments": 660, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.216, "matched_fragments": 661, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1306, "matched_fragments": 466, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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