{ "type": "genome", "identifier": "GCF_001685395.1", "organism": "Paenibacillus yonginensis", "title": "Paenibacillus yonginensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Johan Sukweenadhi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001685395.1", "bioproject": "PRJNA224116", "biosample": "SAMN04419545", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1462996", "species_taxid": "1462996", "organism_name": "Paenibacillus yonginensis", "infraspecific_name": "strain=DCY84", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/15", "asm_name": "ASM168539v1", "asm_submitter": "Johan Sukweenadhi", "gbrs_paired_asm": "GCA_001685395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/685/395/GCF_001685395.1_ASM168539v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4985901", "genome_size_ungapped": "4985901", "gc_percent": "51.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "4581", "protein_coding_gene_count": "4370", "non_coding_gene_count": "118", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-15", "dateModified": "2016-07-15", "datePublished": "2016-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus yonginensis" ], "sample_taxid": [ "1462996" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.414 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4985901", "Number of Sequences": "1", "Longest Sequences (bp)": "4985901", "N50 (bp)": "4985901", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "4582", "Average Protein Length": "309.9", "Coding Ratio (%)": "85.4", "Number of rRNAs": "30", "Number of tRNAs": "86", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus yonginensis", "strain": "strain=DCY84", "accession": "GCA_001685395.1", "taxid": 1462996, "species_taxid": 1462996, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1661, "total_fragments": 1661, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=XB", "accession": "GCA_002240225.1", "taxid": 1619311, "species_taxid": 1619311, "relation_to_type": "type", "validated": true, "ani": 89.3029, "matched_fragments": 1362, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=CGMCC 1.15044", "accession": "GCA_014640575.1", "taxid": 1619311, "species_taxid": 1619311, "relation_to_type": "type", "validated": true, "ani": 89.2232, "matched_fragments": 1326, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pinistramenti", "strain": "strain=ASL46", "accession": "GCA_005869875.1", "taxid": 1768003, "species_taxid": 1768003, "relation_to_type": "type", "validated": true, "ani": 80.7137, "matched_fragments": 750, "total_fragments": 1661, "ani_threshold": 95, "status": 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