{ "type": "genome", "identifier": "GCF_001686935.1", "organism": "Flavobacterium glycines", "title": "Flavobacterium glycines", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001686935.1", "bioproject": "PRJNA224116", "biosample": "SAMN04570198", "wgs_master": "LVEO00000000.1", "refseq_category": "na", "taxid": "551990", "species_taxid": "551990", "organism_name": "Flavobacterium glycines", "infraspecific_name": "strain=NBRC 105008", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/18", "asm_name": "ASM168693v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001686935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/686/935/GCF_001686935.1_ASM168693v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3958831", "genome_size_ungapped": "3958831", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001686935.1-RS_2024_07_30", "annotation_date": "2024-07-30", "total_gene_count": "3277", "protein_coding_gene_count": "3200", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-18", "dateModified": "2016-07-18", "datePublished": "2016-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium glycines" ], "sample_taxid": [ "551990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3958831", "Number of Sequences": "32", "Longest Sequences (bp)": "695975", "N50 (bp)": "229491", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "3190", "Average Protein Length": "366.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_001686935.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1305, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 99.9986, "matched_fragments": 1300, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_007989005.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 99.9975, "matched_fragments": 1299, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 86.9948, "matched_fragments": 987, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 83.972, "matched_fragments": 934, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 83.928, "matched_fragments": 914, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pokkalii", "strain": "strain=L1I52", "accession": "GCA_014596575.1", "taxid": 1940408, "species_taxid": 1940408, "relation_to_type": "type", "validated": true, "ani": 83.5897, "matched_fragments": 894, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 82.7661, "matched_fragments": 819, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.9013, "matched_fragments": 419, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.8454, "matched_fragments": 409, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.7505, "matched_fragments": 406, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.665, "matched_fragments": 456, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.9048, "matched_fragments": 153, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900100165.1", 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83.9179, "matched_fragments": 915, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009909155.2", "gtdb_species": "s__Flavobacterium undicola", "ani": 83.7072, "matched_fragments": 900, "total_fragments": 1305, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014596575.1", "gtdb_species": "s__Flavobacterium pokkalii", "ani": 83.5915, "matched_fragments": 894, 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0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "glycines" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }