{ "type": "genome", "identifier": "GCF_001687545.1", "organism": "Paraurantiacibacter namhicola", "title": "Paraurantiacibacter namhicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001687545.1", "bioproject": "PRJNA224116", "biosample": "SAMN04870533", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "645517", "species_taxid": "645517", "organism_name": "Paraurantiacibacter namhicola", "infraspecific_name": "strain=JCM 16345", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/20", "asm_name": "ASM168754v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001687545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/687/545/GCF_001687545.1_ASM168754v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2591679", "genome_size_ungapped": "2591679", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "2572", "protein_coding_gene_count": "2518", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-20", "dateModified": "2016-07-20", "datePublished": "2016-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraurantiacibacter namhicola" ], "sample_taxid": [ "645517" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: southern coast, Gwangyang Bay" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": 82.0, "max": 82.0 }, "sample_temperature_range": { "min": 262.0, "max": 262.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2591679", "Number of Sequences": "1", "Longest Sequences (bp)": "2591679", "N50 (bp)": "2591679", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "2519", "Average Protein Length": "317.7", "Coding Ratio (%)": "92.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 79.5753, "matched_fragments": 444, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 79.5127, "matched_fragments": 377, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 79.4669, "matched_fragments": 397, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 79.454, "matched_fragments": 423, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 79.4427, "matched_fragments": 435, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 79.2708, "matched_fragments": 405, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter rhizosphaerae", "strain": "strain=GH3-10", "accession": "GCA_009807005.1", "taxid": 2691582, "species_taxid": 2691582, "relation_to_type": "type", "validated": true, "ani": 79.234, "matched_fragments": 401, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 79.1112, "matched_fragments": 347, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 79.0512, "matched_fragments": 368, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania seohaensis", "strain": "strain=SW-135", "accession": "GCA_002795865.1", "taxid": 266951, "species_taxid": 266951, "relation_to_type": "type", "validated": true, "ani": 79.031, "matched_fragments": 338, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.9983, "matched_fragments": 385, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 78.9779, "matched_fragments": 363, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 78.9725, "matched_fragments": 354, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.9716, "matched_fragments": 357, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=S-5", "accession": "GCA_003363135.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 78.8735, "matched_fragments": 375, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=CECT 8624", "accession": "GCA_014191645.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 78.8685, "matched_fragments": 377, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.7828, "matched_fragments": 374, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.782, "matched_fragments": 378, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 78.7296, "matched_fragments": 300, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.7033, "matched_fragments": 372, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.6961, "matched_fragments": 376, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 78.671, "matched_fragments": 356, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.6436, "matched_fragments": 346, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 78.6314, "matched_fragments": 334, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 78.5841, "matched_fragments": 346, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 78.4731, "matched_fragments": 349, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium endophyticum", "strain": "strain=LMG 29518", "accession": "GCA_009827595.1", "taxid": 1808508, "species_taxid": 1808508, "relation_to_type": "type", "validated": true, "ani": 77.6351, "matched_fragments": 200, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001687545.1", "gtdb_species": "s__Paraurantiacibacter namhicola", "ani": 100.0, "matched_fragments": 863, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Paraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004965515.1", "gtdb_species": "s__Alteraurantiacibacter aquimixticola", "ani": 79.8861, "matched_fragments": 460, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001010945.1", "gtdb_species": "s__Alteraurantiacibacter luteus", "ani": 79.5753, "matched_fragments": 444, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827315.1", "gtdb_species": "s__Qipengyuania gaetbuli", "ani": 79.486, "matched_fragments": 379, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003569745.1", "gtdb_species": "s__Croceibacterium sp003569745", "ani": 79.4664, "matched_fragments": 399, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605195.1", "gtdb_species": "s__Alteraurantiacibacter odishensis", "ani": 79.4427, "matched_fragments": 435, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584125.1", "gtdb_species": "s__Alteraurantiacibacter zhengii", "ani": 79.4421, "matched_fragments": 424, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009807005.1", "gtdb_species": "s__Alteraurantiacibacter rhizosphaerae", "ani": 79.234, "matched_fragments": 401, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115585.1", "gtdb_species": "s__Qipengyuania nanhaisediminis", "ani": 79.1038, "matched_fragments": 348, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000181515.1", "gtdb_species": "s__Qipengyuania sp000181515", "ani": 79.0845, "matched_fragments": 365, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584015.1", "gtdb_species": "s__Alteraurantiacibacter xanthus", "ani": 79.0799, "matched_fragments": 352, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001635685.1", "gtdb_species": "s__Qipengyuania sp001635685", "ani": 78.9678, "matched_fragments": 344, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_009827435.1", "gtdb_species": "s__Croceibacterium salegens", "ani": 78.9074, "matched_fragments": 355, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", 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