{ "type": "genome", "identifier": "GCF_001693385.1", "organism": "Bradyrhizobium icense", "title": "Bradyrhizobium icense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Nacional Agraria La Molina", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001693385.1", "bioproject": "PRJNA224116", "biosample": "SAMN05230120", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1274631", "species_taxid": "1274631", "organism_name": "Bradyrhizobium icense", "infraspecific_name": "strain=LMTR 13", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/25", "asm_name": "ASM169338v1", "asm_submitter": "Universidad Nacional Agraria La Molina", "gbrs_paired_asm": "GCA_001693385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/693/385/GCF_001693385.1_ASM169338v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8322773", "genome_size_ungapped": "8322773", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "7877", "protein_coding_gene_count": "7563", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-25", "dateModified": "2016-07-25", "datePublished": "2016-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium icense" ], "sample_taxid": [ "1274631" ], "sample_host_organism": [ "Phaseolus lunatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru: San Camilo, Ica" ], "sample_host_location_id": [], "data_size": "2.321 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8322773", "Number of Sequences": "1", "Longest Sequences (bp)": "8322773", "N50 (bp)": "8322773", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "7859", "Average Protein Length": "293.0", "Coding Ratio (%)": "83.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium icense", "strain": "strain=LMTR 13", "accession": "GCA_001693385.1", "taxid": 1274631, "species_taxid": 1274631, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2774, "total_fragments": 2774, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium retamae", "strain": "strain=Ro19", "accession": "GCA_001440415.1", "taxid": 1300035, "species_taxid": 1300035, "relation_to_type": "type", "validated": true, "ani": 91.4372, "matched_fragments": 2004, "total_fragments": 2774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium murdochi", "strain": "strain=WSM 1741", "accession": "GCA_000472965.1", "taxid": 1038859, "species_taxid": 1038859, "relation_to_type": "type", "validated": true, "ani": 91.4019, "matched_fragments": 2030, "total_fragments": 2774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium australiense", "strain": "strain=WSM 1791", "accession": "GCA_013114825.1", "taxid": 2721161, "species_taxid": 2721161, "relation_to_type": "type", "validated": true, "ani": 90.1735, "matched_fragments": 1924, "total_fragments": 2774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium valentinum", "strain": "strain=LmjM3", "accession": "GCA_001440405.1", "taxid": 1518501, "species_taxid": 1518501, "relation_to_type": "type", "validated": true, "ani": 88.5519, "matched_fragments": 1916, "total_fragments": 2774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, "species_taxid": 2721160, "relation_to_type": "type", "validated": true, "ani": 88.3182, "matched_fragments": 1843, "total_fragments": 2774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0493, "matched_fragments": 1923, "total_fragments": 2774, "ani_threshold": 95, 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