{ "type": "genome", "identifier": "GCF_001693515.2", "organism": "Bradyrhizobium paxllaeri", "title": "Bradyrhizobium paxllaeri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Nacional Agraria La Molina", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001693515.2", "bioproject": "PRJNA224116", "biosample": "SAMN05230119", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "190148", "species_taxid": "190148", "organism_name": "Bradyrhizobium paxllaeri", "infraspecific_name": "strain=LMTR 21", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/26", "asm_name": "ASM169351v2", "asm_submitter": "Universidad Nacional Agraria La Molina", "gbrs_paired_asm": "GCA_001693515.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/693/515/GCF_001693515.2_ASM169351v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8377719", "genome_size_ungapped": "8377719", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001693515.2-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "7915", "protein_coding_gene_count": "7658", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-26", "dateModified": "2019-08-26", "datePublished": "2019-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium paxllaeri" ], "sample_taxid": [ "190148" ], "sample_host_organism": [ "Phaseolus lunatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru: San Camilo, Ica" ], "sample_host_location_id": [], "data_size": "2.329 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8377719", "Number of Sequences": "1", "Longest Sequences (bp)": "8377719", "N50 (bp)": "8377719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "7858", "Average Protein Length": "299.0", "Coding Ratio (%)": "84.1", "Number of rRNAs": "3", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium paxllaeri", "strain": "strain=LMTR 21", "accession": "GCA_001693515.2", "taxid": 190148, "species_taxid": 190148, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2792, "total_fragments": 2792, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 92.8287, "matched_fragments": 2232, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium jicamae", "strain": "strain=PAC68", "accession": "GCA_001440395.1", "taxid": 280332, "species_taxid": 280332, "relation_to_type": "type", "validated": true, "ani": 92.7206, "matched_fragments": 2166, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium murdochi", "strain": "strain=WSM 1741", "accession": "GCA_000472965.1", "taxid": 1038859, "species_taxid": 1038859, "relation_to_type": "type", "validated": true, "ani": 88.1956, "matched_fragments": 1946, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium icense", "strain": "strain=LMTR 13", "accession": "GCA_001693385.1", "taxid": 1274631, "species_taxid": 1274631, "relation_to_type": "type", "validated": true, "ani": 88.1078, "matched_fragments": 2028, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium australiense", "strain": "strain=WSM 1791", "accession": "GCA_013114825.1", "taxid": 2721161, "species_taxid": 2721161, "relation_to_type": "type", "validated": true, "ani": 87.996, "matched_fragments": 1894, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium valentinum", "strain": "strain=LmjM3", "accession": "GCA_001440405.1", "taxid": 1518501, "species_taxid": 1518501, "relation_to_type": "type", "validated": true, "ani": 87.9031, "matched_fragments": 1907, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium retamae", "strain": "strain=Ro19", "accession": "GCA_001440415.1", "taxid": 1300035, "species_taxid": 1300035, "relation_to_type": "type", "validated": true, "ani": 87.8464, "matched_fragments": 1857, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, "species_taxid": 2721160, "relation_to_type": "type", "validated": true, "ani": 87.785, "matched_fragments": 1861, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 83.3385, "matched_fragments": 1292, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 83.1058, "matched_fragments": 1560, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.9524, "matched_fragments": 1480, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 82.9105, "matched_fragments": 1411, "total_fragments": 2792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": 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