{
    "type": "genome",
    "identifier": "GCF_001693735.1",
    "organism": "Orenia metallireducens",
    "title": "Orenia metallireducens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois, Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001693735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04623222",
        "wgs_master": "LWDV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1413210",
        "species_taxid": "1413210",
        "organism_name": "Orenia metallireducens",
        "infraspecific_name": "strain=Z6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/07/26",
        "asm_name": "ASM169373v1",
        "asm_submitter": "University of Illinois, Urbana-Champaign",
        "gbrs_paired_asm": "GCA_001693735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/693/735/GCF_001693735.1_ASM169373v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3465989",
        "genome_size_ungapped": "3442498",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001693735.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3311",
        "protein_coding_gene_count": "3189",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-07-26",
    "dateModified": "2016-07-26",
    "datePublished": "2016-07-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Orenia metallireducens"
        ],
        "sample_taxid": [
            "1413210"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Decatur, IL"
        ],
        "sample_host_location_id": [],
        "data_size": "0.942 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3465989",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "903334",
        "N50 (bp)": "837414",
        "Gap Ratio (%)": "0.678536",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "3299",
        "Average Protein Length": "283.9",
        "Coding Ratio (%)": "81.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Orenia metallireducens",
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                "accession": "GCA_001693735.1",
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                "species_taxid": 1413210,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Orenia marismortui",
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                "accession": "GCA_000379025.1",
                "taxid": 46469,
                "species_taxid": 46469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4699,
                "matched_fragments": 477,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halonatronum saccharophilum",
                "strain": "strain=DSM 13868",
                "accession": "GCA_000517025.1",
                "taxid": 150060,
                "species_taxid": 150060,
                "relation_to_type": "type",
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                "ani": 77.4563,
                "matched_fragments": 190,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacteroides halobius",
                "strain": "strain=DSM 5150",
                "accession": "GCA_000328625.1",
                "taxid": 42422,
                "species_taxid": 42422,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7579,
                "matched_fragments": 153,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natroniella sulfidigena",
                "strain": "strain=AHT3",
                "accession": "GCA_023223645.1",
                "taxid": 723921,
                "species_taxid": 723921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5972,
                "matched_fragments": 125,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natroniella acetigena",
                "strain": "strain=Z-7937",
                "accession": "GCA_023227745.1",
                "taxid": 52004,
                "species_taxid": 52004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3617,
                "matched_fragments": 111,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobacter jeridensis",
                "strain": "strain=DSM 23230",
                "accession": "GCA_016908315.1",
                "taxid": 706427,
                "species_taxid": 706427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0624,
                "matched_fragments": 107,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
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        "gtdb_result": [
            {
                "accession": "GCF_001693735.1",
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                "ani": 99.9982,
                "matched_fragments": 1148,
                "total_fragments": 1150,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Orenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003001995.1",
                "gtdb_species": "s__Orenia metallireducens_B",
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                "matched_fragments": 869,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Orenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000379025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Orenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "96.95",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000517025.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000328625.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900114655.1",
                "gtdb_species": "s__Frackibacter sp900114655",
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                "matched_fragments": 84,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Frackibacter",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Halanaerobacter jeridensis",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "metallireducens"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}