{
    "type": "genome",
    "identifier": "GCF_001696805.1",
    "organism": "Photorhabdus australis subsp. thailandensis",
    "title": "Photorhabdus australis subsp. thailandensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Goethe University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001696805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04110119",
        "wgs_master": "LOMY00000000.1",
        "refseq_category": "na",
        "taxid": "2805096",
        "species_taxid": "286156",
        "organism_name": "Photorhabdus australis subsp. thailandensis",
        "infraspecific_name": "strain=PB68.1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/08/01",
        "asm_name": "ASM169680v1",
        "asm_submitter": "Goethe University",
        "gbrs_paired_asm": "GCA_001696805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/696/805/GCF_001696805.1_ASM169680v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4912527",
        "genome_size_ungapped": "4909274",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "208",
        "contig_count": "208",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001696805.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4549",
        "protein_coding_gene_count": "4216",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-08-01",
    "dateModified": "2016-08-01",
    "datePublished": "2016-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Photorhabdus australis subsp. thailandensis"
        ],
        "sample_taxid": [
            "2805096"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.399 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4912527",
        "Number of Sequences": "208",
        "Longest Sequences (bp)": "374072",
        "N50 (bp)": "128122",
        "Gap Ratio (%)": "0.066218",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "4260",
        "Average Protein Length": "307.8",
        "Coding Ratio (%)": "80.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Photorhabdus australis subsp. thailandensis",
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                "accession": "GCA_001696805.1",
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                "species_taxid": 286156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1556,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photorhabdus australis",
                "strain": "strain=DSM 17609",
                "accession": "GCA_000711895.1",
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                "species_taxid": 286156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5526,
                "matched_fragments": 1368,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photorhabdus asymbiotica",
                "strain": "strain=DSM 15149",
                "accession": "GCA_003634575.1",
                "taxid": 291112,
                "species_taxid": 291112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5692,
                "matched_fragments": 1390,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus heterorhabditis subsp. aluminescens",
                "strain": "strain=Q614",
                "accession": "GCA_013277735.1",
                "taxid": 2805094,
                "species_taxid": 880156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3064,
                "matched_fragments": 1255,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus heterorhabditis",
                "strain": "strain=SF41",
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                "species_taxid": 880156,
                "relation_to_type": "type",
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                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus cinerea",
                "strain": "strain=DSM 19724",
                "accession": "GCA_011189575.1",
                "taxid": 471575,
                "species_taxid": 471575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1956,
                "matched_fragments": 1268,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus noenieputensis",
                "strain": "strain=DSM 25462",
                "accession": "GCA_023108895.1",
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                "species_taxid": 1208607,
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                "validated": true,
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                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus aegyptia",
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                "accession": "GCA_000612035.1",
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                "species_taxid": 2805098,
                "relation_to_type": "type",
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                "ani": 85.6536,
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                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus kayaii",
                "strain": "strain=DSM 15194",
                "accession": "GCA_025384895.1",
                "taxid": 230088,
                "species_taxid": 230088,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6396,
                "matched_fragments": 1116,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus temperata",
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                "accession": "GCA_025384845.1",
                "taxid": 574560,
                "species_taxid": 574560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6221,
                "matched_fragments": 1136,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus hindustanensis",
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                "accession": "GCA_002968995.1",
                "taxid": 2918802,
                "species_taxid": 2918802,
                "relation_to_type": "type",
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                "ani": 85.6164,
                "matched_fragments": 1156,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus kleinii",
                "strain": "strain=DSM 23513",
                "accession": "GCA_025384885.1",
                "taxid": 768034,
                "species_taxid": 768034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.435,
                "matched_fragments": 1126,
                "total_fragments": 1563,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_000711895.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Photorhabdus",
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            },
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                "accession": "GCF_003634575.1",
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                "min_intra_species_af": "0.99",
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            {
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                "total_fragments": 1563,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Photorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "97.27",
                "mean_intra_species_af": "0.91",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_001010285.1",
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                "mean_intra_species_ani": "N/A",
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            },
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            },
            {
                "accession": "GCF_001684335.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "coding_genes": 4348.255,
        "rRNA16S_genes": 7.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "australis",
        "subsp.",
        "thailandensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}