{ "type": "genome", "identifier": "GCF_001698205.1", "organism": "Tsuneonella dongtanensis", "title": "Tsuneonella dongtanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001698205.1", "bioproject": "PRJNA224116", "biosample": "SAMN04870882", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "692370", "species_taxid": "692370", "organism_name": "Tsuneonella dongtanensis", "infraspecific_name": "strain=KCTC 22672", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/02", "asm_name": "ASM169820v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001698205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/698/205/GCF_001698205.1_ASM169820v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3009495", "genome_size_ungapped": "3009495", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "2963", "protein_coding_gene_count": "2898", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-02", "dateModified": "2016-08-02", "datePublished": "2016-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Tsuneonella dongtanensis" ], "sample_taxid": [ "692370" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chongming Island" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3009495", "Number of Sequences": "1", "Longest Sequences (bp)": "3009495", "N50 (bp)": "3009495", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "2929", "Average Protein Length": "319.6", "Coding Ratio (%)": "93.3", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tsuneonella troitsensis", "strain": "strain=JCM 17037", "accession": "GCA_001441535.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 82.3617, "matched_fragments": 611, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=KMM 6042", "accession": "GCA_003730315.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 82.3555, "matched_fragments": 619, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 82.0262, "matched_fragments": 607, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella rigui", "strain": "strain=KCTC 42620", "accession": "GCA_003958625.1", "taxid": 1708790, "species_taxid": 1708790, "relation_to_type": "type", "validated": true, "ani": 81.6515, "matched_fragments": 591, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, "relation_to_type": "type", "validated": true, "ani": 80.5848, "matched_fragments": 504, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella aeria", "strain": "strain=100921-2", "accession": "GCA_009827495.1", "taxid": 1837929, "species_taxid": 1837929, "relation_to_type": "type", "validated": true, "ani": 80.2547, "matched_fragments": 483, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 80.1678, "matched_fragments": 450, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 80.028, "matched_fragments": 433, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 79.8921, "matched_fragments": 470, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.7154, "matched_fragments": 488, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.9815, "matched_fragments": 360, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 78.9411, "matched_fragments": 359, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 78.8603, "matched_fragments": 344, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { 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