{
    "type": "genome",
    "identifier": "GCF_001700435.1",
    "organism": "Paenibacillus pectinilyticus",
    "title": "Paenibacillus pectinilyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of agricultural Sciences(CAAS)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001700435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05006820",
        "wgs_master": "LYPC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "512399",
        "species_taxid": "512399",
        "organism_name": "Paenibacillus pectinilyticus",
        "infraspecific_name": "strain=KCTC13222",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/08/05",
        "asm_name": "ASM170043v1",
        "asm_submitter": "Chinese Academy of agricultural Sciences(CAAS)",
        "gbrs_paired_asm": "GCA_001700435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/700/435/GCF_001700435.1_ASM170043v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7877932",
        "genome_size_ungapped": "7876601",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001700435.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "6780",
        "protein_coding_gene_count": "6595",
        "non_coding_gene_count": "119",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-08-05",
    "dateModified": "2016-08-05",
    "datePublished": "2016-08-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus pectinilyticus"
        ],
        "sample_taxid": [
            "512399"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.249 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 30.0,
            "max": 30.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7877932",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "1355521",
        "N50 (bp)": "601187",
        "Gap Ratio (%)": "0.017035",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "6788",
        "Average Protein Length": "342.5",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "102",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "organism_name": "Paenibacillus pectinilyticus",
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                "relation_to_type": "type",
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                "species_taxid": 2654975,
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                "status": "below_threshold"
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                "ani_threshold": 95,
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            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Paenibacillus alginolyticus",
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                "species_taxid": 59839,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alginolyticus",
                "strain": "strain=DSM 5050",
                "accession": "GCA_000422905.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus phytorum",
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                "accession": "GCA_013141715.1",
                "taxid": 2654977,
                "species_taxid": 2654977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6939,
                "matched_fragments": 842,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ferrarius",
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                "accession": "GCA_002027705.1",
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                "species_taxid": 1469647,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 891,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus germinis",
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                "accession": "GCA_013141785.1",
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                "species_taxid": 2654979,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus planticolens",
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                "species_taxid": 2654976,
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                "validated": true,
                "ani": 80.2612,
                "matched_fragments": 727,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceris",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=ATCC 842",
                "accession": "GCA_022811565.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6238,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus mendelii",
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                "accession": "GCA_024498075.1",
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                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_001700435.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}