{ "type": "genome", "identifier": "GCF_001702265.1", "organism": "Pseudomonas aylmerensis", "title": "Pseudomonas aylmerensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Eastern Cereal and Oilseed Research Centre", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001702265.1", "bioproject": "PRJNA224116", "biosample": "SAMN05325920", "wgs_master": "MAUE00000000.1", "refseq_category": "reference genome", "taxid": "1869229", "species_taxid": "1869229", "organism_name": "Pseudomonas aylmerensis", "infraspecific_name": "strain=S1E40", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/10", "asm_name": "ASM170226v1", "asm_submitter": "Eastern Cereal and Oilseed Research Centre", "gbrs_paired_asm": "GCA_001702265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/702/265/GCF_001702265.1_ASM170226v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6984066", "genome_size_ungapped": "6984066", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001702265.1-RS_2024_11_19", "annotation_date": "2024-11-19", "total_gene_count": "6391", "protein_coding_gene_count": "6234", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-10", "dateModified": "2016-08-10", "datePublished": "2016-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas aylmerensis" ], "sample_taxid": [ "1869229" ], "sample_host_organism": [], 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{ "organism_name": "Pseudomonas fluorescens", "strain": "strain=ATCC 13525", "accession": "GCA_002943685.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1478, "matched_fragments": 1641, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1392, "matched_fragments": 1663, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NCTC10038", "accession": "GCA_900475215.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1314, "matched_fragments": 1689, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_001269845.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1174, "matched_fragments": 1684, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas antarctica", "strain": "strain=CMS 35", "accession": "GCA_010634845.1", "taxid": 219572, "species_taxid": 219572, "relation_to_type": "type", "validated": true, "ani": 88.1159, "matched_fragments": 1634, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas gessardii", "strain": "", "accession": "GCA_900625085.1", "taxid": 78544, "species_taxid": 78544, "relation_to_type": "type", "validated": true, "ani": 86.594, "matched_fragments": 1404, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas gessardii", "strain": "strain=DSM 17152", "accession": "GCA_009671285.1", "taxid": 78544, "species_taxid": 78544, "relation_to_type": "type", "validated": true, "ani": 86.5509, "matched_fragments": 1412, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas gessardii", "strain": "strain=DSM 17152", "accession": "GCA_001983165.1", "taxid": 78544, "species_taxid": 78544, "relation_to_type": "type", "validated": true, "ani": 86.5411, "matched_fragments": 1412, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 86.2178, "matched_fragments": 1512, "total_fragments": 2306, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, 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