{ "type": "genome", "identifier": "GCF_001704115.1", "organism": "Acinetobacter larvae", "title": "Acinetobacter larvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biogas Institute of Ministry of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001704115.1", "bioproject": "PRJNA224116", "biosample": "SAMN05520995", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1789224", "species_taxid": "1789224", "organism_name": "Acinetobacter larvae", "infraspecific_name": "strain=BRTC-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/12", "asm_name": "ASM170411v1", "asm_submitter": "Biogas Institute of Ministry of Agriculture", "gbrs_paired_asm": "GCA_001704115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/115/GCF_001704115.1_ASM170411v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3741098", "genome_size_ungapped": "3741098", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001704115.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3312", "protein_coding_gene_count": "3126", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-12", "dateModified": "2016-08-12", "datePublished": "2016-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter larvae" ], "sample_taxid": [ "1789224" ], "sample_host_organism": [ "Omphisa fuscidentalis Hampson" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.053 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3741098", "Number of Sequences": "1", "Longest Sequences (bp)": "3741098", "N50 (bp)": "3741098", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "3249", "Average Protein Length": "323.3", "Coding Ratio (%)": "84.2", "Number of rRNAs": "21", "Number of tRNAs": "77", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter larvae", "strain": "strain=BRTC-1", "accession": "GCA_001704115.1", "taxid": 1789224, "species_taxid": 1789224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1247, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 79.0718, "matched_fragments": 246, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pullicarnis", "strain": "strain=S23", "accession": "GCA_006352475.1", "taxid": 2576829, "species_taxid": 2576829, "relation_to_type": "type", "validated": true, "ani": 78.9141, "matched_fragments": 363, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 78.7851, "matched_fragments": 299, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rudis", "strain": "strain=DSM 24031", "accession": "GCA_000829675.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 78.7636, "matched_fragments": 309, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.7439, "matched_fragments": 309, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter stercoris", "strain": "strain=KPC-SM-21", "accession": "GCA_900323515.1", "taxid": 2126983, "species_taxid": 2126983, "relation_to_type": "type", "validated": true, "ani": 78.7022, "matched_fragments": 246, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 78.5925, "matched_fragments": 285, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.5848, "matched_fragments": 237, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter harbinensis", "strain": "strain=HITLi 7", "accession": "GCA_000816495.1", "taxid": 1353941, "species_taxid": 1353941, "relation_to_type": "type", "validated": true, "ani": 78.4999, "matched_fragments": 255, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.4472, "matched_fragments": 210, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 78.4148, "matched_fragments": 272, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 78.3976, "matched_fragments": 268, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.3554, "matched_fragments": 291, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.3453, "matched_fragments": 297, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 78.3389, "matched_fragments": 286, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.3114, "matched_fragments": 270, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.2942, "matched_fragments": 257, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 78.2794, "matched_fragments": 302, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.2486, "matched_fragments": 294, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 78.1609, "matched_fragments": 296, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 78.0827, "matched_fragments": 265, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001704115.1", "gtdb_species": "s__Acinetobacter larvae", "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001307195.1", "gtdb_species": "s__Acinetobacter equi", "ani": 79.2008, "matched_fragments": 229, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015218165.1", "gtdb_species": "s__Acinetobacter piscicola_A", "ani": 79.1036, "matched_fragments": 305, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_006352475.1", "gtdb_species": "s__Acinetobacter pullicarnis", "ani": 78.986, "matched_fragments": 364, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013343215.1", "gtdb_species": "s__Acinetobacter lwoffii_C", "ani": 78.9426, "matched_fragments": 215, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004345325.1", "gtdb_species": "s__Acinetobacter calcoaceticus_D", "ani": 78.8712, "matched_fragments": 317, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 78.8491, "matched_fragments": 299, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_001758345.1", "gtdb_species": "s__Acinetobacter towneri_A", "ani": 78.8322, "matched_fragments": 248, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000368565.1", "gtdb_species": "s__Acinetobacter gerneri", "ani": 78.8029, "matched_fragments": 311, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000829675.1", "gtdb_species": "s__Acinetobacter rudis", "ani": 78.7777, "matched_fragments": 308, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900323515.1", "gtdb_species": "s__Acinetobacter stercoris", "ani": 78.7025, "matched_fragments": 245, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000368785.1", "gtdb_species": "s__Acinetobacter towneri", "ani": 78.5989, "matched_fragments": 286, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 48, "status": "-" }, { "accession": "GCF_004331035.1", "gtdb_species": "s__Acinetobacter sp004331035", "ani": 78.5506, "matched_fragments": 265, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331175.1", "gtdb_species": "s__Acinetobacter sp004331175", "ani": 78.5388, "matched_fragments": 255, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009939195.1", "gtdb_species": "s__Acinetobacter kanungonis", "ani": 78.5081, "matched_fragments": 281, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.15", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000400735.1", "gtdb_species": "s__Acinetobacter tandoii", "ani": 78.3622, "matched_fragments": 271, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002233755.1", "gtdb_species": "s__Acinetobacter piscicola", "ani": 78.3491, "matched_fragments": 286, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004336635.1", "gtdb_species": "s__Acinetobacter sp004336635", "ani": 78.3475, "matched_fragments": 266, "total_fragments": 1247, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003024515.2", "gtdb_species": "s__Acinetobacter sichuanensis", "ani": 78.2686, "matched_fragments": 303, "total_fragments": 1247, "gtdb_taxonomy": 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