{ "type": "genome", "identifier": "GCF_001704635.1", "organism": "Streptomyces sparsogenes", "title": "Streptomyces sparsogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tianjin University of Commerce", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001704635.1", "bioproject": "PRJNA224116", "biosample": "SAMN05366068", "wgs_master": "MAXF00000000.1", "refseq_category": "reference genome", "taxid": "67365", "species_taxid": "67365", "organism_name": "Streptomyces sparsogenes", "infraspecific_name": "strain=ATCC 25498", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/14", "asm_name": "ASM170463v1", "asm_submitter": "Tianjin University of Commerce", "gbrs_paired_asm": "GCA_001704635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/635/GCF_001704635.1_ASM170463v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8907947", "genome_size_ungapped": "8907947", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "276", "contig_count": "276", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001704635.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "7983", "protein_coding_gene_count": "7611", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-14", "dateModified": "2016-08-14", "datePublished": "2016-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces sparsogenes" ], "sample_taxid": [ "67365" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.387 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8907947", "Number of Sequences": "276", "Longest Sequences (bp)": "296212", "N50 (bp)": "72375", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "7748", "Average Protein Length": "324.3", "Coding Ratio (%)": "84.6", "Number of rRNAs": "14", "Number of tRNAs": "78", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces sparsogenes", "strain": "strain=ATCC 25498", "accession": "GCA_001704635.1", "taxid": 67365, "species_taxid": 67365, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2828, 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"below_threshold" }, { "organism_name": "Streptomyces yatensis", "strain": "strain=DSM 41771", "accession": "GCA_018069625.1", "taxid": 155177, "species_taxid": 155177, "relation_to_type": "type", "validated": true, "ani": 84.7507, "matched_fragments": 1857, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces javensis", "strain": "strain=DSM 41764", "accession": "GCA_016103505.1", "taxid": 114698, "species_taxid": 114698, "relation_to_type": "type", "validated": true, "ani": 84.7453, "matched_fragments": 1472, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 82.8256, "matched_fragments": 1252, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 81.6535, "matched_fragments": 1353, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces huiliensis", "strain": "strain=SCA2-4", "accession": "GCA_020037025.1", "taxid": 2876027, "species_taxid": 2876027, "relation_to_type": "type", "validated": true, "ani": 81.2918, "matched_fragments": 1151, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 81.0334, "matched_fragments": 1144, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermoviolaceus subsp. thermoviolaceus", 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