{ "type": "genome", "identifier": "GCF_001705425.1", "organism": "Mesorhizobium hungaricum", "title": "Mesorhizobium hungaricum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Applied Sciences of Western Switzerland hepia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001705425.1", "bioproject": "PRJNA224116", "biosample": "SAMN03219998", "wgs_master": "MDEO00000000.1", "refseq_category": "reference genome", "taxid": "1566387", "species_taxid": "1566387", "organism_name": "Mesorhizobium hungaricum", "infraspecific_name": "strain=UASWS1009", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/15", "asm_name": "ASM170542v1", "asm_submitter": "University of Applied Sciences of Western Switzerland hepia", "gbrs_paired_asm": "GCA_001705425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/705/425/GCF_001705425.1_ASM170542v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6303257", "genome_size_ungapped": "6303257", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001705425.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "6075", "protein_coding_gene_count": "5963", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-15", "dateModified": "2016-08-15", "datePublished": "2016-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium hungaricum" ], "sample_taxid": [ "1566387" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland: Geneva" ], "sample_host_location_id": [], "data_size": "1.748 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6303257", "Number of Sequences": "41", "Longest Sequences (bp)": "1551960", "N50 (bp)": "631149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "6021", "Average Protein Length": "307.3", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, 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"matched_fragments": 1101, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 81.6019, "matched_fragments": 963, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 81.5839, "matched_fragments": 1041, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 81.4996, "matched_fragments": 1061, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sanjuanii", "strain": "strain=BSA136", "accession": "GCA_002529485.1", "taxid": 2037900, "species_taxid": 2037900, "relation_to_type": "type", "validated": true, "ani": 81.4781, "matched_fragments": 930, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium neociceri", "strain": "strain=CCANP35", "accession": "GCA_013520985.1", "taxid": 1307853, "species_taxid": 1307853, "relation_to_type": "type", "validated": true, "ani": 81.4753, "matched_fragments": 1057, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium loti", "strain": "strain=DSM 2626", "accession": "GCA_003148495.1", "taxid": 381, "species_taxid": 381, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4181, "matched_fragments": 1084, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 81.3499, "matched_fragments": 1080, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 81.3407, "matched_fragments": 960, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 81.2566, "matched_fragments": 955, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 81.163, "matched_fragments": 918, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 81.026, "matched_fragments": 871, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 17455", "accession": "GCA_014138635.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 80.9625, "matched_fragments": 942, "total_fragments": 2087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 15910", 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