{ "type": "genome", "identifier": "GCF_001708125.1", "organism": "Jiangella alba", "title": "Jiangella alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001708125.1", "bioproject": "PRJNA224116", "biosample": "SAMN05275832", "wgs_master": "MBFJ00000000.1", "refseq_category": "na", "taxid": "561176", "species_taxid": "561176", "organism_name": "Jiangella alba", "infraspecific_name": "strain=YIM 61503", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/23", "asm_name": "ASM170812v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_001708125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/708/125/GCF_001708125.1_ASM170812v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7664864", "genome_size_ungapped": "7664278", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001708125.1-RS_2024_07_09", "annotation_date": "2024-07-09", "total_gene_count": "7066", "protein_coding_gene_count": "6910", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-23", "dateModified": "2016-08-23", "datePublished": "2016-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Jiangella alba" ], "sample_taxid": [ "561176" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xishuangbanna" ], "sample_host_location_id": [], "data_size": "2.006 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7664864", "Number of Sequences": "33", "Longest Sequences (bp)": "967323", "N50 (bp)": "390506", "Gap Ratio (%)": "0.007645", "GCcontent (%)": "72.8", "Number of CDSs": "7056", "Average Protein Length": "334.0", "Coding Ratio (%)": "92.2", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2541, "total_fragments": 2542, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 2535, "total_fragments": 2542, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 93.453, "matched_fragments": 2004, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 89.9411, "matched_fragments": 1907, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 89.3937, "matched_fragments": 1786, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 89.3093, "matched_fragments": 1817, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 88.9899, "matched_fragments": 1554, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 88.7393, "matched_fragments": 1663, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 87.5092, "matched_fragments": 1755, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 87.401, "matched_fragments": 1589, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella asiatica", "strain": "strain=5K138", "accession": "GCA_004349065.1", "taxid": 2530372, "species_taxid": 2530372, "relation_to_type": "type", "validated": true, "ani": 83.4626, "matched_fragments": 1398, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella gansuensis", "strain": "strain=DSM 44835", "accession": "GCA_000515395.1", "taxid": 281473, "species_taxid": 281473, "relation_to_type": "type", "validated": true, "ani": 83.4425, "matched_fragments": 1323, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 76.5859, "matched_fragments": 524, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 76.2824, "matched_fragments": 979, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 76.2067, "matched_fragments": 728, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 76.0923, "matched_fragments": 787, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 76.04, "matched_fragments": 819, "total_fragments": 2542, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900106035.1", "gtdb_species": "s__Jiangella alba", "ani": 99.996, "matched_fragments": 2535, "total_fragments": 2542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001270745.1", "gtdb_species": "s__Jiangella muralis", "ani": 93.4814, "matched_fragments": 2001, "total_fragments": 2542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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