{ "type": "genome", "identifier": "GCF_001720485.1", "organism": "Cobetia marina", "title": "Cobetia marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean university of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001720485.1", "bioproject": "PRJNA224116", "biosample": "SAMN05592162", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "28258", "species_taxid": "28258", "organism_name": "Cobetia marina", "infraspecific_name": "strain=JCM 21022", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/07", "asm_name": "ASM172048v1", "asm_submitter": "Ocean university of China", "gbrs_paired_asm": "GCA_001720485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/720/485/GCF_001720485.1_ASM172048v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4176400", "genome_size_ungapped": "4176400", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001720485.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3494", "protein_coding_gene_count": "3371", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-07", "dateModified": "2016-09-07", "datePublished": "2016-09-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Cobetia marina" ], "sample_taxid": [ "28258" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Woods Hole, MA" ], "sample_host_location_id": [], "data_size": "1.154 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4176400", "Number of Sequences": "1", "Longest Sequences (bp)": "4176400", "N50 (bp)": "4176400", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "3456", "Average Protein Length": "343.2", "Coding Ratio (%)": "85.2", "Number of rRNAs": "21", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cobetia marina", "strain": "strain=JCM 21022", "accession": "GCA_001720485.1", "taxid": 28258, "species_taxid": 28258, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1391, "total_fragments": 1392, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cobetia crustatorum", "strain": "strain=JO1", "accession": "GCA_000591415.1", "taxid": 553385, "species_taxid": 553385, "relation_to_type": "type", "validated": true, "ani": 84.058, "matched_fragments": 925, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 79.5181, "matched_fragments": 461, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 79.4657, "matched_fragments": 491, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.1574, "matched_fragments": 411, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 79.095, "matched_fragments": 443, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas borealis", "strain": "strain=ATF 5.2", "accession": "GCA_004798905.1", "taxid": 2508710, "species_taxid": 2508710, "relation_to_type": "type", "validated": true, "ani": 79.0166, "matched_fragments": 409, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 78.9384, "matched_fragments": 412, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 78.9171, "matched_fragments": 453, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 78.8705, "matched_fragments": 458, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, 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78.7692, "matched_fragments": 360, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 78.7514, "matched_fragments": 410, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 78.6895, "matched_fragments": 401, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 78.6789, "matched_fragments": 393, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 78.6554, "matched_fragments": 392, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pantelleriensis", "strain": "strain=AAP", "accession": "GCA_900102875.1", "taxid": 48727, "species_taxid": 48727, "relation_to_type": "type", "validated": true, "ani": 78.5518, "matched_fragments": 406, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas huangheensis", "strain": "strain=BJGMM-B45", "accession": "GCA_000470745.1", "taxid": 1178482, "species_taxid": 1178482, "relation_to_type": "type", "validated": true, "ani": 78.4371, "matched_fragments": 293, "total_fragments": 1392, "ani_threshold": 95, "status": 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