{
    "type": "genome",
    "identifier": "GCF_001720585.1",
    "organism": "Cereibacter johrii",
    "title": "Cereibacter johrii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UoH",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001720585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05188776",
        "wgs_master": "MABH00000000.1",
        "refseq_category": "na",
        "taxid": "445629",
        "species_taxid": "445629",
        "organism_name": "Cereibacter johrii",
        "infraspecific_name": "strain=JA192",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/01",
        "asm_name": "ASM172058v1",
        "asm_submitter": "UoH",
        "gbrs_paired_asm": "GCA_001720585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/720/585/GCF_001720585.1_ASM172058v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4512111",
        "genome_size_ungapped": "4512111",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "257",
        "contig_count": "257",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "4445",
        "protein_coding_gene_count": "4236",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-01",
    "dateModified": "2016-09-01",
    "datePublished": "2016-09-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cereibacter johrii"
        ],
        "sample_taxid": [
            "445629"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Godumakunta Village, Hyderabad"
        ],
        "sample_host_location_id": [],
        "data_size": "1.229 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4512111",
        "Number of Sequences": "257",
        "Longest Sequences (bp)": "91673",
        "N50 (bp)": "27197",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.1",
        "Number of CDSs": "4087",
        "Average Protein Length": "304.9",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "8",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cereibacter johrii",
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                "accession": "GCA_001720585.1",
                "taxid": 445629,
                "species_taxid": 445629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1361,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter johrii",
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                "accession": "GCA_003046325.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9624,
                "matched_fragments": 1354,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "[Luteovulum] sphaeroides subsp. megalophilum",
                "strain": "strain=DSM 18937",
                "accession": "GCA_900188265.1",
                "taxid": 418630,
                "species_taxid": 1063,
                "relation_to_type": "type",
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                "ani": 95.2748,
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                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter sphaeroides",
                "strain": "strain=NBRC 12203",
                "accession": "GCA_007991035.1",
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                "species_taxid": 1063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1879,
                "matched_fragments": 1220,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter sphaeroides",
                "strain": "strain=2.4.1",
                "accession": "GCA_003324715.1",
                "taxid": 1063,
                "species_taxid": 1063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.168,
                "matched_fragments": 1177,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter sphaeroides",
                "strain": "strain=2.4.1",
                "accession": "GCA_000273405.1",
                "taxid": 1063,
                "species_taxid": 1063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1171,
                "matched_fragments": 1182,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2185,
                "matched_fragments": 952,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter sediminicola",
                "strain": "strain=JA983",
                "accession": "GCA_007668225.1",
                "taxid": 2584941,
                "species_taxid": 2584941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1106,
                "matched_fragments": 931,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter ovatus",
                "strain": "strain=JA234",
                "accession": "GCA_900207575.1",
                "taxid": 439529,
                "species_taxid": 439529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0372,
                "matched_fragments": 744,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter calidifons",
                "strain": "strain=M37P",
                "accession": "GCA_011174775.1",
                "taxid": 2715277,
                "species_taxid": 2715277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2931,
                "matched_fragments": 526,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter fulva",
                "strain": "strain=con5",
                "accession": "GCA_018798885.1",
                "taxid": 2840474,
                "species_taxid": 2840474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6075,
                "matched_fragments": 498,
                "total_fragments": 1382,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001720585.1",
                "gtdb_species": "s__Cereibacter_A johrii",
                "ani": 100.0,
                "matched_fragments": 1361,
                "total_fragments": 1382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.1736,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000012905.2",
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                "matched_fragments": 1179,
                "total_fragments": 1382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.1736,
                "mean_intra_species_ani": "98.82",
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                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCA_017599285.1",
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                "matched_fragments": 817,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_002407205.1",
                "gtdb_species": "s__Cereibacter_A sp002407205",
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                "matched_fragments": 928,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_900207575.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003034985.1",
                "gtdb_species": "s__Cereibacter changlensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.046,
        "cell_length": 0.477,
        "doubling_h": null,
        "growth_tmp": 28.0,
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        "genome_size": 4924362.0,
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        "sporulation": 0.0,
        "motility": 0.0,
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        "facultative_respiration": 1.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cereibacter",
        "johrii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}